Bibliotecas PUC-SP - Busca Integrada

Machine learning approaches to predict the Plant-associated phenotype of Xanthomonas strains

Por Dennie te Molder, Wasin Poncheewin, Peter J. Schaap, Jasper J. Koehorst
Publicado no BMC Genomics (2021-11-01)

Forward Genetics by Genome Sequencing Uncovers the Central Role of the Aspergillus niger goxB Locus in Hydrogen Peroxide Induced Glucose Oxidase Expression

Por Thanaporn Laothanachareon, Thanaporn Laothanachareon, Juan Antonio Tamayo-Ramos, Bart Nijsse, Peter J. Schaap
Publicado no Frontiers in Microbiology (2018-09-01)

Studying microbial functionality within the gut ecosystem by systems biology

Por Bastian Hornung, Vitor A. P. Martins dos Santos, Hauke Smidt, Peter J. Schaap
Publicado no Genes & Nutrition (2018-03-01)

Toxicological response of the model fungus Saccharomyces cerevisiae to different concentrations of commercial graphene nanoplatelets

Por Maria Suarez-Diez, Santiago Porras, Felix Laguna-Teno, Peter J. Schaap, Juan A. Tamayo-Ramos
Publicado no Scientific Reports (2020-02-01)

Modeling the Metabolic State of Mycobacterium tuberculosis Upon Infection

Por Rienk A. Rienksma, Peter J. Schaap, Vitor A. P. Martins dos Santos, Maria Suarez-Diez
Publicado no Frontiers in Cellular and Infection Microbiology (2018-08-01)

Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline.

Por Mark Davids, Floor Hugenholtz, Vitor Martins dos Santos, Hauke Smidt, Michiel Kleerebezem, Peter J Schaap
Publicado no PLoS ONE (2016-01-01)

Model-driven approach for the production of butyrate from CO2/H2 by a novel co-culture of C. autoethanogenum and C. beijerinckii

Por Sara Benito-Vaquerizo, Niels Nouse, Peter J. Schaap, Peter J. Schaap, Jeroen Hugenholtz, Stanley Brul, Ana M. López-Contreras, Vitor A. P. Martins dos Santos, Vitor A. P. Martins dos Santos, Maria Suarez-Diez
Publicado no Frontiers in Microbiology (2022-12-01)

Handheld versus mounted laser speckle contrast perfusion imaging demonstrated in psoriasis lesions

Por Ata Chizari, Mirjam J. Schaap, Tom Knop, Yoeri E. Boink, Marieke M. B. Seyger, Wiendelt Steenbergen
Publicado no Scientific Reports (2021-08-01)

Genome-scale metabolic modeling underscores the potential of Cutaneotrichosporon oleaginosus ATCC 20509 as a cell factory for biofuel production

Por Nhung Pham, Maarten Reijnders, Maria Suarez-Diez, Bart Nijsse, Jan Springer, Gerrit Eggink, Peter J. Schaap
Publicado no Biotechnology for Biofuels (2021-01-01)

Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View.

Por Edoardo Saccenti, David Nieuwenhuijse, Jasper J Koehorst, Vitor A P Martins dos Santos, Peter J Schaap
Publicado no PLoS ONE (2015-01-01)

Effects of Argonaute on Gene Expression in Thermus thermophilus.

Por Daan C Swarts, Jasper J Koehorst, Edze R Westra, Peter J Schaap, John van der Oost
Publicado no PLoS ONE (2015-01-01)

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics [version 1; referees: 1 approved, 2 ap...

Por Jasper J. Koehorst, Edoardo Saccenti, Peter J. Schaap, Vitor A. P. Martins dos Santos, Maria Suarez-Diez
Publicado no F1000Research (2016-08-01)

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics [version 2; referees: 1 approved, 2 ap...

Por Jasper J. Koehorst, Edoardo Saccenti, Peter J. Schaap, Vitor A. P. Martins dos Santos, Maria Suarez-Diez
Publicado no F1000Research (2016-11-01)

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics [version 3; referees: 1 approved, 2 ap...

Por Jasper J. Koehorst, Edoardo Saccenti, Peter J. Schaap, Vitor A. P. Martins dos Santos, Maria Suarez-Diez
Publicado no F1000Research (2017-06-01)

Combined Transcriptome Sequencing of Mycoplasma hyopneumoniae and Infected Pig Lung Tissue Reveals Up-Regulation of Bacterial F1-Like ATPase and Down-Regulation of the P102 Cilium...

Por Tjerko Kamminga, Tjerko Kamminga, Nirupama Benis, Vitor Martins dos Santos, Jetta J. E. Bijlsma, Peter J. Schaap
Publicado no Frontiers in Microbiology (2020-07-01)

Navigating the Valley of Death: Perceptions of Industry and Academia on Production Platforms and Opportunities in Biotechnology

Por Linde F.C. Kampers, Enrique Asin-Garcia, Peter J. Schaap, Annemarie Wagemakers, Vitor A.P. Martins dos Santos
Publicado no EFB Bioeconomy Journal (2022-11-01)

Classification of the plant-associated lifestyle of Pseudomonas strains using genome properties and machine learning

Por Wasin Poncheewin, Anne D. van Diepeningen, Theo A. J. van der Lee, Maria Suarez-Diez, Peter J. Schaap
Publicado no Scientific Reports (2022-06-01)

A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia.

Por William T Scott, Sara Benito-Vaquerizo, Johannes Zimmermann, Djordje Bajić, Almut Heinken, Maria Suarez-Diez, Peter J Schaap
Publicado no PLoS Computational Biology (2023-08-01)

Modulating D-amino acid oxidase (DAAO) substrate specificity through facilitated solvent access.

Por Kalyanasundaram Subramanian, Artur Góra, Ruud Spruijt, Karolina Mitusińska, Maria Suarez-Diez, Vitor Martins Dos Santos, Peter J Schaap
Publicado no PLoS ONE (2018-01-01)

Proteomic analysis of the secretory response of Aspergillus niger to D-maltose and D-xylose.

Por José Miguel P Ferreira de Oliveira, Mark W J van Passel, Peter J Schaap, Leo H de Graaff
Publicado no PLoS ONE (2011-01-01)