Bibliotecas PUC-SP - Busca Integrada

Gene expression network reconstruction by convex feature selection when incorporating genetic perturbations.

Por Benjamin A Logsdon, Jason Mezey
Publicado no PLoS Computational Biology (2010-01-01)

PUMA: a unified framework for penalized multiple regression analysis of GWAS data.

Por Gabriel E Hoffman, Benjamin A Logsdon, Jason G Mezey
Publicado no PLoS Computational Biology (2013-01-01)

Identifying Network Perturbation in Cancer.

Por Maxim Grechkin, Benjamin A Logsdon, Andrew J Gentles, Su-In Lee
Publicado no PLoS Computational Biology (2016-05-01)

SPINE: SParse eIgengene NEtwork linking gene expression clusters in Dehalococcoides mccartyi to perturbations in experimental conditions.

Por Cresten B Mansfeldt, Benjamin A Logsdon, Garrett E Debs, Ruth E Richardson
Publicado no PLoS ONE (2015-01-01)

Transcriptomic stratification of late-onset Alzheimer's cases reveals novel genetic modifiers of disease pathology.

Por Nikhil Milind, Christoph Preuss, Annat Haber, Guruprasad Ananda, Shubhabrata Mukherjee, Cai John, Sarah Shapley, Benjamin A Logsdon, Paul K Crane, Gregory W Carter
Publicado no PLoS Genetics (2020-06-01)

Transfer learning‐trained convolutional neural networks identify novel MRI biomarkers of Alzheimer's disease progression

Por Yi Li, Annat Haber, Christoph Preuss, Cai John, Asli Uyar, Hongtian Stanley Yang, Benjamin A. Logsdon, Vivek Philip, R. Krishna Murthy Karuturi, Gregory W. Carter, The Alzheimer's Disease Neuroimaging Initiative
Publicado no Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring (2021-01-01)

Multi-tissue neocortical transcriptome-wide association study implicates 8 genes across 6 genomic loci in Alzheimer’s disease

Por Jake Gockley, Kelsey S. Montgomery, William L. Poehlman, Jesse C. Wiley, Yue Liu, Ekaterina Gerasimov, Anna K. Greenwood, Solveig K. Sieberts, Aliza P. Wingo, Thomas S. Wingo, Lara M. Mangravite, Benjamin A. Logsdon
Publicado no Genome Medicine (2021-05-01)

Molecular estimation of neurodegeneration pseudotime in older brains

Por Sumit Mukherjee, Laura Heath, Christoph Preuss, Suman Jayadev, Gwenn A. Garden, Anna K. Greenwood, Solveig K. Sieberts, Philip L. De Jager, Nilüfer Ertekin-Taner, Gregory W. Carter, Lara M. Mangravite, Benjamin A. Logsdon
Publicado no Nature Communications (2020-11-01)

Author Correction: Molecular estimation of neurodegeneration pseudotime in older brains

Por Sumit Mukherjee, Laura Heath, Christoph Preuss, Suman Jayadev, Gwenn A. Garden, Anna K. Greenwood, Solveig K. Sieberts, Philip L. De Jager, Nilüfer Ertekin-Taner, Gregory W. Carter, Lara M. Mangravite, Benjamin A. Logsdon
Publicado no Nature Communications (2020-12-01)

A machine learning approach to integrate big data for precision medicine in acute myeloid leukemia

Por Su-In Lee, Safiye Celik, Benjamin A. Logsdon, Scott M. Lundberg, Timothy J. Martins, Vivian G. Oehler, Elihu H. Estey, Chris P. Miller, Sylvia Chien, Jin Dai, Akanksha Saxena, C. Anthony Blau, Pamela S. Becker
Publicado no Nature Communications (2018-01-01)

Genetic and multi‐omic risk assessment of Alzheimer's disease implicates core associated biological domains

Por Gregory A. Cary, Jesse C. Wiley, Jake Gockley, Stephen Keegan, Sai Sruthi Amirtha Ganesh, Laura Heath, Robert R. Butler III, Lara M. Mangravite, Benjamin A. Logsdon, Frank M. Longo, Allan Levey, Anna K. Greenwood, Gregory W. Carter
Publicado no Alzheimer’s & Dementia: Translational Research & Clinical Interventions (2024-04-01)

A novel systems biology approach to evaluate mouse models of late-onset Alzheimer’s disease

Por Christoph Preuss, Ravi Pandey, Erin Piazza, Alexander Fine, Asli Uyar, Thanneer Perumal, Dylan Garceau, Kevin P. Kotredes, Harriet Williams, Lara M. Mangravite, Bruce T. Lamb, Adrian L. Oblak, Gareth R. Howell, Michael Sasner, Benjamin A. Logsdon, the MODEL-AD Consortium, Gregory W. Carter
Publicado no Molecular Neurodegeneration (2020-11-01)

Large-scale proteomic analysis of human brain identifies proteins associated with cognitive trajectory in advanced age

Por Aliza P. Wingo, Eric B. Dammer, Michael S. Breen, Benjamin A. Logsdon, Duc M. Duong, Juan C. Troncosco, Madhav Thambisetty, Thomas G. Beach, Geidy E. Serrano, Eric M. Reiman, Richard J. Caselli, James J. Lah, Nicholas T. Seyfried, Allan I. Levey, Thomas S. Wingo
Publicado no Nature Communications (2019-04-01)

Manifestations of Alzheimer’s disease genetic risk in the blood are evident in a multiomic analysis in healthy adults aged 18 to 90

Por Laura Heath, John C. Earls, Andrew T. Magis, Sergey A. Kornilov, Jennifer C. Lovejoy, Cory C. Funk, Noa Rappaport, Benjamin A. Logsdon, Lara M. Mangravite, Brian W. Kunkle, Eden R. Martin, Adam C. Naj, Nilüfer Ertekin-Taner, Todd E. Golde, Leroy Hood, Nathan D. Price, Alzheimer’s Disease Genetics Consortium
Publicado no Scientific Reports (2022-04-01)

Atlas of RNA editing events affecting protein expression in aged and Alzheimer’s disease human brain tissue

Por Yiyi Ma, Eric B. Dammer, Daniel Felsky, Duc M. Duong, Hans-Ulrich Klein, Charles C. White, Maotian Zhou, Benjamin A. Logsdon, Cristin McCabe, Jishu Xu, Minghui Wang, Thomas S. Wingo, James J. Lah, Bin Zhang, Julie Schneider, Mariet Allen, Xue Wang, Nilüfer Ertekin-Taner, Nicholas T. Seyfried, Allan I. Levey, David A. Bennett, Philip L. De Jager
Publicado no Nature Communications (2021-12-01)

Model organism development and evaluation for late‐onset Alzheimer's disease: MODEL‐AD

Por Adrian L. Oblak, Stefania Forner, Paul R. Territo, Michael Sasner, Gregory W. Carter, Gareth R. Howell, Stacey J. Sukoff‐Rizzo, Benjamin A. Logsdon, Lara M. Mangravite, Ali Mortazavi, David Baglietto‐Vargas, Kim N. Green, Grant R. MacGregor, Marcelo A. Wood, Andrea J. Tenner, Frank M. LaFerla, Bruce T. Lamb, and The MODEL‐AD, Consortium
Publicado no Alzheimer’s & Dementia: Translational Research & Clinical Interventions (2020-01-01)

Corrigendum: Uncovering Disease Mechanisms in a Novel Mouse Model Expressing Humanized APOEε4 and Trem2*R47H

Por Kevin P. Kotredes, Adrian Oblak, Ravi S. Pandey, Peter Bor-Chian Lin, Dylan Garceau, Harriet Williams, Asli Uyar, Rita O'Rourke, Sarah O'Rourke, Cynthia Ingraham, Daria Bednarczyk, Melisa Belanger, Zackary Cope, Kate E. Foley, Benjamin A. Logsdon, Lara M. Mangravite, Stacey J. Sukoff Rizzo, Paul R. Territo, Gregory W. Carter, Michael Sasner, Bruce T. Lamb, Gareth R. Howell
Publicado no Frontiers in Aging Neuroscience (2022-02-01)

Uncovering Disease Mechanisms in a Novel Mouse Model Expressing Humanized APOEε4 and Trem2*R47H

Por Kevin P. Kotredes, Adrian Oblak, Ravi S. Pandey, Peter Bor-Chian Lin, Dylan Garceau, Harriet Williams, Asli Uyar, Rita O’Rourke, Sarah O’Rourke, Cynthia Ingraham, Daria Bednarczyk, Melisa Belanger, Zackary Cope, Kate E. Foley, Benjamin A. Logsdon, Lara M. Mangravite, Stacey J. Sukoff Rizzo, Paul R. Territo, Gregory W. Carter, Michael Sasner, Bruce T. Lamb, Gareth R. Howell
Publicado no Frontiers in Aging Neuroscience (2021-10-01)

A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.

Por Rehan Qayyum, Beverly M Snively, Elad Ziv, Michael A Nalls, Yongmei Liu, Weihong Tang, Lisa R Yanek, Leslie Lange, Michele K Evans, Santhi Ganesh, Melissa A Austin, Guillaume Lettre, Diane M Becker, Alan B Zonderman, Andrew B Singleton, Tamara B Harris, Emile R Mohler, Benjamin A Logsdon, Charles Kooperberg, Aaron R Folsom, James G Wilson, Lewis C Becker, Alexander P Reiner
Publicado no PLoS Genetics (2012-01-01)

Improving breast cancer survival analysis through competition-based multidimensional modeling.

Por Erhan Bilal, Janusz Dutkowski, Justin Guinney, In Sock Jang, Benjamin A Logsdon, Gaurav Pandey, Benjamin A Sauerwine, Yishai Shimoni, Hans Kristian Moen Vollan, Brigham H Mecham, Oscar M Rueda, Jorg Tost, Christina Curtis, Mariano J Alvarez, Vessela N Kristensen, Samuel Aparicio, Anne-Lise Børresen-Dale, Carlos Caldas, Andrea Califano, Stephen H Friend, Trey Ideker, Eric E Schadt, Gustavo A Stolovitzky, Adam A Margolin
Publicado no PLoS Computational Biology (2013-01-01)