Bibliotecas PUC-SP - Busca Integrada

SMASH: Scalable Method for Analyzing Spatial Heterogeneity of genes in spatial transcriptomics data.

by Souvik Seal, Benjamin G Bitler, Debashis Ghosh
Published in PLoS Genetics (2023-10-01)

Assessing Genetic Variants in Matched Biocompartments From Patients With Serous Ovarian Cancer

by Brooke E. Sanders, Lisa Ku, Paul Walker, Benjamin G. Bitler PhD
Published in Technology in Cancer Research & Treatment (2021-06-01)

Claudin-4 localization in epithelial ovarian cancer

by Margaret C. Neville, Patricia G. Webb, Heidi K. Baumgartner, Benjamin G. Bitler
Published in Heliyon (2022-10-01)

Wnt Signaling in Gynecologic Malignancies

by Alexandra McMellen, Elizabeth R. Woodruff, Bradley R. Corr, Benjamin G. Bitler, Marisa R. Moroney
Published in International Journal of Molecular Sciences (2020-06-01)

SPF: A spatial and functional data analytic approach to cell imaging data.

by Thao Vu, Julia Wrobel, Benjamin G Bitler, Erin L Schenk, Kimberly R Jordan, Debashis Ghosh
Published in PLoS Computational Biology (2022-06-01)

Feasibility of assessing symptoms associated with ovarian cancer using an electronic medical intake questionnaire

by Eric D. Helm, Cam Nguyen, Stephen Rotholz, Saketh R. Guntupalli, Barbara A. Goff, Benjamin G. Bitler, Kian Behbakht
Published in Gynecologic Oncology Reports (2025-06-01)

Claudin-4 as a dual regulator of genome stability and immune evasion in high grade serous ovarian cancer

by Benjamin G. Bitler, Julie Lang, Daniel Nunez-Avellaneda, Kian Behbakht, Natalie R. Davidson, Elizabeth R. Woodruff, Fabian R. Villagomez
Published in Scientific Reports (2025-11-01)

On clustering for cell-phenotyping in multiplex immunohistochemistry (mIHC) and multiplexed ion beam imaging (MIBI) data

by Souvik Seal, Julia Wrobel, Amber M. Johnson, Raphael A. Nemenoff, Erin L. Schenk, Benjamin G. Bitler, Kimberly R. Jordan, Debashis Ghosh
Published in BMC Research Notes (2022-06-01)

SPOP E3 Ubiquitin Ligase Adaptor Promotes Cellular Senescence by Degrading the SENP7 deSUMOylase

by Hengrui Zhu, Shancheng Ren, Benjamin G. Bitler, Katherine M. Aird, Zhigang Tu, Emmanuel Skordalakes, Yasheng Zhu, Jun Yan, Yinghao Sun, Rugang Zhang
Published in Cell Reports (2015-11-01)

A platform-independent framework for phenotyping of multiplex tissue imaging data.

by Mansooreh Ahmadian, Christian Rickert, Angela Minic, Julia Wrobel, Benjamin G Bitler, Fuyong Xing, Michael Angelo, Elena W Y Hsieh, Debashis Ghosh, Kimberly R Jordan
Published in PLoS Computational Biology (2023-09-01)

Small cell carcinoma of the ovary hypercalcemic type (SCCOHT): A review and novel case with dual germline SMARCA4 and BRCA2 mutations

by Brooke E. Sanders, Rebecca Wolsky, Elizabeth S. Doughty, Kristen L. Wells, Debashis Ghosh, Lisa Ku, Joseph G. Pressey, Benjamin G. Bitler, Lindsay W. Brubaker
Published in Gynecologic Oncology Reports (2022-12-01)

Suppression of Nucleotide Metabolism Underlies the Establishment and Maintenance of Oncogene-Induced Senescence

by Katherine M. Aird, Gao Zhang, Hua Li, Zhigang Tu, Benjamin G. Bitler, Azat Garipov, Hong Wu, Zhi Wei, Stephan N. Wagner, Meenhard Herlyn, Rugang Zhang
Published in Cell Reports (2013-04-01)

BET Bromodomain Inhibition Synergizes with PARP Inhibitor in Epithelial Ovarian Cancer

by Sergey Karakashev, Hengrui Zhu, Yuhki Yokoyama, Bo Zhao, Nail Fatkhutdinov, Andrew V. Kossenkov, Andrew J. Wilson, Fiona Simpkins, David Speicher, Dineo Khabele, Benjamin G. Bitler, Rugang Zhang
Published in Cell Reports (2017-12-01)

Ovarian cancer think tank: An overview of the current status of ovarian cancer screening and recommendations for future directions

by Julia M. Dexter, Lindsay W. Brubaker, Benjamin G. Bitler, Barbara A. Goff, Usha Menon, Katherine N. Moore, Karthik M. Sundaram, Christine S. Walsh, Saketh R. Guntupalli, Kian Behbakht
Published in Gynecologic Oncology Reports (2024-06-01)

BET Bromodomain Inhibition Promotes Anti-tumor Immunity by Suppressing PD-L1 Expression

by Hengrui Zhu, Fee Bengsch, Nikolaos Svoronos, Melanie R. Rutkowski, Benjamin G. Bitler, Michael J. Allegrezza, Yuhki Yokoyama, Andrew V. Kossenkov, James E. Bradner, Jose R. Conejo-Garcia, Rugang Zhang
Published in Cell Reports (2016-09-01)

SWI/SNF catalytic subunits’ switch drives resistance to EZH2 inhibitors in ARID1A-mutated cells

by Shuai Wu, Nail Fatkhutdinov, Takeshi Fukumoto, Benjamin G. Bitler, Pyoung Hwa Park, Andrew V. Kossenkov, Marco Trizzino, Hsin-Yao Tang, Lin Zhang, Alessandro Gardini, David W. Speicher, Rugang Zhang
Published in Nature Communications (2018-10-01)

CARM1-expressing ovarian cancer depends on the histone methyltransferase EZH2 activity

by Sergey Karakashev, Hengrui Zhu, Shuai Wu, Yuhki Yokoyama, Benjamin G. Bitler, Pyoung-Hwa Park, Jeong-Heon Lee, Andrew V. Kossenkov, Krutika Satish Gaonkar, Huihuang Yan, Ronny Drapkin, Jose R. Conejo-Garcia, David W. Speicher, Tamas Ordog, Rugang Zhang
Published in Nature Communications (2018-02-01)

Repurposing Pan-HDAC Inhibitors for ARID1A-Mutated Ovarian Cancer

by Takeshi Fukumoto, Pyoung Hwa Park, Shuai Wu, Nail Fatkhutdinov, Sergey Karakashev, Timothy Nacarelli, Andrew V. Kossenkov, David W. Speicher, Stephanie Jean, Lin Zhang, Tian-Li Wang, Ie-Ming Shih, Jose R. Conejo-Garcia, Benjamin G. Bitler, Rugang Zhang
Published in Cell Reports (2018-03-01)

Clinical Evaluation of a Multi-Omic Diagnostic Model for Early-Stage Ovarian Cancer Detection

by Robert A. Law, Brendan M. Giles, Rachel Culp-Hill, Enkhtuya Radnaa, Mattie Goldberg, Charles M. Nichols, Maria Wong, Connor Hansen, Collin Hill, Katrin Eurich, Emily Prendergast, Kian Behbakht, Benjamin G. Bitler, Anna Jeter, Vuna S. Fa, James Robert White, Kevin Elias, Abigail McElhinny
Published in Diagnostics (2025-09-01)

Multi-Omic Approaches Identify Metabolic and Autophagy Regulators Important in Ovarian Cancer Dissemination

by Lindsay J. Wheeler, Zachary L. Watson, Lubna Qamar, Tomomi M. Yamamoto, Brandon T. Sawyer, Kelly D. Sullivan, Santosh Khanal, Molishree Joshi, Veronique Ferchaud-Roucher, Harry Smith, Lauren A. Vanderlinden, Sky W. Brubaker, Cecilia M. Caino, Hyunmin Kim, Joaquin M. Espinosa, Jennifer K. Richer, Benjamin G. Bitler
Published in iScience (2019-09-01)