Bibliotecas PUC-SP - Busca Integrada

A novel ensemble learning method for de novo computational identification of DNA binding sites

di Chakravarty, Arijit, Carlson, Jonathan M, Khetani, Radhika S, Gross, Robert H
Pubblicazione 2007

Bounded search for de novo identification of degenerate cis-regulatory elements

di Carlson, Jonathan M, Chakravarty, Arijit, Khetani, Radhika S, Gross, Robert H
Pubblicazione 2006

PhyloDet: a scalable visualization tool for mapping multiple traits to large evolutionary trees

di Lee, Bongshin, Nachmanson, Lev, Robertson, George, Carlson, Jonathan M., Heckerman, David
Pubblicazione 2009

A novel ensemble learning method for <it>de novo </it>computational identification of DNA binding sites

di Khetani Radhika S, Carlson Jonathan M, Chakravarty Arijit, Gross Robert H
Pubblicato in BMC Bioinformatics (2007-07-01)

Bounded search for de novo identification of degenerate cis-regulatory elements

di Khetani Radhika S, Chakravarty Arijit, Carlson Jonathan M, Gross Robert H
Pubblicato in BMC Bioinformatics (2006-05-01)

SCOPE: a web server for practical de novo motif discovery

di Carlson, Jonathan M., Chakravarty, Arijit, DeZiel, Charles E., Gross, Robert H.
Pubblicazione 2007

Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag

di Carlson, Jonathan M., Brumme, Zabrina L., Rousseau, Christine M., Brumme, Chanson J., Matthews, Philippa, Kadie, Carl, Mullins, James I., Walker, Bruce D., Harrigan, P. Richard, Goulder, Philip J. R., Heckerman, David
Pubblicazione 2008

Unique features of HLA-mediated HIV evolution in a Mexican cohort: a comparative study

di Avila-Rios, Santiago, Ormsby, Christopher E, Carlson, Jonathan M, Valenzuela-Ponce, Humberto, Blanco-Heredia, Juan, Garrido-Rodriguez, Daniela, Garcia-Morales, Claudia, Heckerman, David, Brumme, Zabrina L, Mallal, Simon, John, Mina, Espinosa, Enrique, Reyes-Teran, Gustavo
Pubblicazione 2009

Unique features of HLA-mediated HIV evolution in a Mexican cohort: a comparative study

di Brumme Zabrina L, Heckerman David, Garcia-Morales Claudia, Garrido-Rodriguez Daniela, Blanco-Heredia Juan, Valenzuela-Ponce Humberto, Carlson Jonathan M, Ormsby Christopher E, Avila-Rios Santiago, Mallal Simon, John Mina, Espinosa Enrique, Reyes-Teran Gustavo
Pubblicato in Retrovirology (2009-08-01)

Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients

di Goepfert, Paul A., Lumm, Wendy, Farmer, Paul, Matthews, Philippa, Prendergast, Andrew, Carlson, Jonathan M., Derdeyn, Cynthia A., Tang, Jianming, Kaslow, Richard A., Bansal, Anju, Yusim, Karina, Heckerman, David, Mulenga, Joseph, Allen, Susan, Goulder, Philip J.R., Hunter, Eric
Pubblicazione 2008

Protective HLA Class I Alleles That Restrict Acute-Phase CD8(+) T-Cell Responses Are Associated with Viral Escape Mutations Located in Highly Conserved Regions of Human Immunodefic...

di Wang, Yaoyu E., Li, Bin, Carlson, Jonathan M., Streeck, Hendrik, Gladden, Adrianne D., Goodman, Robert, Schneidewind, Arne, Power, Karen A., Toth, Ildiko, Frahm, Nicole, Alter, Galit, Brander, Christian, Carrington, Mary, Walker, Bruce D., Altfeld, Marcus, Heckerman, David, Allen, Todd M.
Pubblicazione 2009

Genetic Characterization of Human Immunodeficiency Virus Type 1 in Elite Controllers: Lack of Gross Genetic Defects or Common Amino Acid Changes

di Miura, Toshiyuki, Brockman, Mark A., Brumme, Chanson J., Brumme, Zabrina L., Carlson, Jonathan M., Pereyra, Florencia, Trocha, Alicja, Addo, Marylyn M., Block, Brian L., Rothchild, Alissa C., Baker, Brett M., Flynn, Theresa, Schneidewind, Arne, Li, Bin, Wang, Yaoyu E., Heckerman, David, Allen, Todd M., Walker, Bruce D.
Pubblicazione 2008

HLA-Associated Immune Escape Pathways in HIV-1 Subtype B Gag, Pol and Nef Proteins

di Brumme, Zabrina L., John, Mina, Carlson, Jonathan M., Brumme, Chanson J., Chan, Dennison, Brockman, Mark A., Swenson, Luke C., Tao, Iris, Szeto, Sharon, Rosato, Pamela, Sela, Jennifer, Kadie, Carl M., Frahm, Nicole, Brander, Christian, Haas, David W., Riddler, Sharon A., Haubrich, Richard, Walker, Bruce D., Harrigan, P. Richard, Heckerman, David, Mallal, Simon
Pubblicazione 2009

HLA Class I-Driven Evolution of Human Immunodeficiency Virus Type 1 Subtype C Proteome: Immune Escape and Viral Load

di Rousseau, Christine M., Daniels, Marcus G., Carlson, Jonathan M., Kadie, Carl, Crawford, Hayley, Prendergast, Andrew, Matthews, Philippa, Payne, Rebecca, Rolland, Morgane, Raugi, Dana N., Maust, Brandon S., Learn, Gerald H., Nickle, David C., Coovadia, Hoosen, Ndung'u, Thumbi, Frahm, Nicole, Brander, Christian, Walker, Bruce D., Goulder, Philip J. R., Bhattacharya, Tanmoy, Heckerman, David E., Korber, Bette T., Mullins, James I.
Pubblicazione 2008