Bibliotecas PUC-SP - Busca Integrada

Phylogenomic reconstruction indicates mitochondrial ancestor was an energy parasite.

Por Zhang Wang, Martin Wu
Publicado no PLoS ONE (2014-01-01)

The powerbend distribution provides a unified model for the species abundance distribution across animals, plants and microbes

Por Yingnan Gao, Ahmed Abdullah, Martin Wu
Publicado no Nature Communications (2025-04-01)

Accounting for alignment uncertainty in phylogenomics.

Por Martin Wu, Sourav Chatterji, Jonathan A Eisen
Publicado no PLoS ONE (2012-01-01)

Re-evaluating the evidence for a universal genetic boundary among microbial species

Por Connor S. Murray, Yingnan Gao, Martin Wu
Publicado no Nature Communications (2021-07-01)

Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance.

Por Steven W Kembel, Martin Wu, Jonathan A Eisen, Jessica L Green
Publicado no PLoS Computational Biology (2012-01-01)

Glucocorticoids coordinate changes in gut microbiome composition in wild North American red squirrels

Por Lauren Petrullo, Tiantian Ren, Martin Wu, Rudy Boonstra, Rupert Palme, Stan Boutin, Andrew G. McAdam, Ben Dantzer
Publicado no Scientific Reports (2022-02-01)

Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees.

Por Dongying Wu, Martin Wu, Aaron Halpern, Douglas B Rusch, Shibu Yooseph, Marvin Frazier, J Craig Venter, Jonathan A Eisen
Publicado no PLoS ONE (2011-03-01)

Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates.

Por Daniel B Sloan, Andrew J Alverson, John P Chuckalovcak, Martin Wu, David E McCauley, Jeffrey D Palmer, Douglas R Taylor
Publicado no PLoS Biology (2012-01-01)

Seasonal, spatial, and maternal effects on gut microbiome in wild red squirrels

Por Tiantian Ren, Stan Boutin, Murray M. Humphries, Ben Dantzer, Jamieson C. Gorrell, David W. Coltman, Andrew G. McAdam, Martin Wu
Publicado no Microbiome (2017-12-01)

Apple cider vinegar soaks do not alter the skin bacterial microbiome in atopic dermatitis.

Por Lydia A Luu, Richard H Flowers, Yingnan Gao, Martin Wu, Sofia Gasperino, Ann L Kellams, DeVon C Preston, Barrett J Zlotoff, Julia A Wisniewski, Steven L Zeichner
Publicado no PLoS ONE (2021-01-01)

Alanyl-glutamine supplementation for Clostridioides difficile infection treatment (ACT): a double-blind randomised controlled trial study protocol

Por Jonathan R Swann, Paul V Targonski, Cirle A Warren, Jae Hyun Shin, Ekta N Bansal, Deiziane V D S Costa, Xin Qun Wang, Martin Wu, Brian W Behm, Laurie Archbald-Pannone
Publicado no BMJ Open (2023-07-01)

Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum.

Por Dongying Wu, Jason Raymond, Martin Wu, Sourav Chatterji, Qinghu Ren, Joel E Graham, Donald A Bryant, Frank Robb, Albert Colman, Luke J Tallon, Jonathan H Badger, Ramana Madupu, Naomi L Ward, Jonathan A Eisen
Publicado no PLoS ONE (2009-01-01)

The Roles of Gut Microbiome and Plasma Metabolites in the Associations between ABO Blood Groups and Insulin Homeostasis: The Microbiome and Insulin Longitudinal Evaluation Study (M...

Por Ruifang Li-Gao, Kirk Grubbs, Alain G. Bertoni, Kristi L. Hoffman, Joseph F. Petrosino, Gautam Ramesh, Martin Wu, Jerome I. Rotter, Yii-Der Ida Chen, Anne M. Evans, Richard J. Robinson, Laura Sommerville, Dennis Mook-Kanamori, Mark O. Goodarzi, Gregory A. Michelotti, Patricia A. Sheridan
Publicado no Metabolites (2022-08-01)

Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901.

Por Martin Wu, Qinghu Ren, A Scott Durkin, Sean C Daugherty, Lauren M Brinkac, Robert J Dodson, Ramana Madupu, Steven A Sullivan, James F Kolonay, Daniel H Haft, William C Nelson, Luke J Tallon, Kristine M Jones, Luke E Ulrich, Juan M Gonzalez, Igor B Zhulin, Frank T Robb, Jonathan A Eisen
Publicado no PLoS Genetics (2005-11-01)

Correction: Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901.

Por Martin Wu, Qinghu Ren, A. Scott Durkin, Sean C Daugherty, Lauren M Brinkac, Robert J Dodson, Ramana Madupu, Steven A Sullivan, James F Kolonay, Daniel H Haft, William C Nelson, Luke J Tallon, Kristine M Jones, Luke E Ulrich, Juan M Gonzalez, Igor B Zhulin, Frank T Robb, Jonathan A Eisen
Publicado no PLoS Genetics (2006-04-01)

Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements.

Por Martin Wu, Ling V Sun, Jessica Vamathevan, Markus Riegler, Robert Deboy, Jeremy C Brownlie, Elizabeth A McGraw, William Martin, Christian Esser, Nahal Ahmadinejad, Christian Wiegand, Ramana Madupu, Maureen J Beanan, Lauren M Brinkac, Sean C Daugherty, A Scott Durkin, James F Kolonay, William C Nelson, Yasmin Mohamoud, Perris Lee, Kristi Berry, M Brook Young, Teresa Utterback, Janice Weidman, William C Nierman, Ian T Paulsen, Karen E Nelson, Hervé Tettelin, Scott L O'Neill, Jonathan A Eisen
Publicado no PLoS Biology (2004-03-01)

Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath).

Por Naomi Ward, Øivind Larsen, James Sakwa, Live Bruseth, Hoda Khouri, A Scott Durkin, George Dimitrov, Lingxia Jiang, David Scanlan, Katherine H Kang, Matt Lewis, Karen E Nelson, Barbara Methé, Martin Wu, John F Heidelberg, Ian T Paulsen, Derrick Fouts, Jacques Ravel, Hervé Tettelin, Qinghu Ren, Tim Read, Robert T DeBoy, Rekha Seshadri, Steven L Salzberg, Harald B Jensen, Nils Kåre Birkeland, William C Nelson, Robert J Dodson, Svenn H Grindhaug, Ingeborg Holt, Ingvar Eidhammer, Inge Jonasen, Susan Vanaken, Terry Utterback, Tamara V Feldblyum, Claire M Fraser, Johan R Lillehaug, Jonathan A Eisen
Publicado no PLoS Biology (2004-10-01)

Comparative genomics of emerging human ehrlichiosis agents.

Por Julie C Dunning Hotopp, Mingqun Lin, Ramana Madupu, Jonathan Crabtree, Samuel V Angiuoli, Jonathan A Eisen, Rekha Seshadri, Qinghu Ren, Martin Wu, Teresa R Utterback, Shannon Smith, Matthew Lewis, Hoda Khouri, Chunbin Zhang, Hua Niu, Quan Lin, Norio Ohashi, Ning Zhi, William Nelson, Lauren M Brinkac, Robert J Dodson, M J Rosovitz, Jaideep Sundaram, Sean C Daugherty, Tanja Davidsen, Anthony S Durkin, Michelle Gwinn, Daniel H Haft, Jeremy D Selengut, Steven A Sullivan, Nikhat Zafar, Liwei Zhou, Faiza Benahmed, Heather Forberger, Rebecca Halpin, Stephanie Mulligan, Jeffrey Robinson, Owen White, Yasuko Rikihisa, Hervé Tettelin
Publicado no PLoS Genetics (2006-02-01)

Correction: Comparative Genomics of Emerging Human Ehrlichiosis Agents.

Por Julie C Dunning Hotopp, Mingqun Lin, Ramana Madupu, Jonathan Crabtree, Samuel V Angiuoli, Jonathan A Eisen, Rekha Seshadri, Qinghu Ren, Martin Wu, Teresa R Utterback, Shannon Smith, Matthew Lewis, Hoda Khouri, Chunbin Zhang, Hua Niu, Quan Lin, Norio Ohashi, Ning Zhi, William Nelson, Lauren M Brinkac, Robert J Dodson, M. J Rosovitz, Jaideep Sundaram, Sean C Daugherty, Tanja Davidsen, Anthony S Durkin, Michelle Gwinn, Daniel H Haft, Jeremy D Selengut, Steven A Sullivan, Nikhat Zafar, Liwei Zhou, Faiza Benahmed, Heather Forberger, Rebecca Halpin, Stephanie Mulligan, Jeffrey Robinson, Owen White, Yasuko Rikihisa, Hervé Tettelin
Publicado no PLoS Genetics (2006-12-01)

Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote.

Por Jonathan A Eisen, Robert S Coyne, Martin Wu, Dongying Wu, Mathangi Thiagarajan, Jennifer R Wortman, Jonathan H Badger, Qinghu Ren, Paolo Amedeo, Kristie M Jones, Luke J Tallon, Arthur L Delcher, Steven L Salzberg, Joana C Silva, Brian J Haas, William H Majoros, Maryam Farzad, Jane M Carlton, Roger K Smith, Jyoti Garg, Ronald E Pearlman, Kathleen M Karrer, Lei Sun, Gerard Manning, Nels C Elde, Aaron P Turkewitz, David J Asai, David E Wilkes, Yufeng Wang, Hong Cai, Kathleen Collins, B Andrew Stewart, Suzanne R Lee, Katarzyna Wilamowska, Zasha Weinberg, Walter L Ruzzo, Dorota Wloga, Jacek Gaertig, Joseph Frankel, Che-Chia Tsao, Martin A Gorovsky, Patrick J Keeling, Ross F Waller, Nicola J Patron, J Michael Cherry, Nicholas A Stover, Cynthia J Krieger, Christina del Toro, Hilary F Ryder, Sondra C Williamson, Rebecca A Barbeau, Eileen P Hamilton, Eduardo Orias
Publicado no PLoS Biology (2006-09-01)