Bibliotecas PUC-SP - Busca Integrada

Molecular subtyping of leiomyosarcoma with 3′ end RNA sequencing

Por Xiangqian Guo, Erna Forgó, Matt van de Rijn
Publicado no Genomics Data (2015-09-01)

Detection of SS18-SSX1/2 fusion transcripts in circulating tumor cells of patients with synovial sarcoma

Por Joanna Przybyl, Matt van de Rijn, Piotr Rutkowski
Publicado no Diagnostic Pathology (2019-03-01)

Detection of MDM2 amplification by shallow whole genome sequencing of cell-free DNA of patients with dedifferentiated liposarcoma

Por Joanna Przybyl, Lien Spans, Kristen Ganjoo, Nam Bui, David Mohler, Jeffrey Norton, George Poultsides, Maria Debiec-Rychter, Matt van de Rijn
Publicado no PLoS ONE (2022-01-01)

Detection of MDM2 amplification by shallow whole genome sequencing of cell-free DNA of patients with dedifferentiated liposarcoma.

Por Joanna Przybyl, Lien Spans, Kristen Ganjoo, Nam Bui, David Mohler, Jeffrey Norton, George Poultsides, Maria Debiec-Rychter, Matt van de Rijn
Publicado no PLoS ONE (2022-01-01)

Gene expression patterns in pancreatic tumors, cells and tissues.

Por Anson W Lowe, Mari Olsen, Ying Hao, Sum P Lee, Kyu Taek Lee, Xin Chen, Matt van de Rijn, Patrick O Brown
Publicado no PLoS ONE (2007-03-01)

Prognostic relevance of the hexosamine biosynthesis pathway activation in leiomyosarcoma

Por Angela Tolwani, Magdalena Matusiak, Nam Bui, Erna Forgó, Sushama Varma, Lucia Baratto, Andrei Iagaru, Alexander J. Lazar, Matt van de Rijn, Joanna Przybyl
Publicado no npj Genomic Medicine (2021-05-01)

A tri-marker proliferation index predicts biochemical recurrence after surgery for prostate cancer.

Por Sameer Malhotra, Jacques Lapointe, Keyan Salari, John P Higgins, Michelle Ferrari, Kelli Montgomery, Matt van de Rijn, James D Brooks, Jonathan R Pollack
Publicado no PLoS ONE (2011-01-01)

MicroRNA profiling of BRCA1/2 mutation-carrying and non-mutation-carrying high-grade serous carcinomas of ovary.

Por Cheng-Han Lee, Subbaya Subramanian, Andrew H Beck, Inigo Espinosa, Janine Senz, Shirley X Zhu, David Huntsman, Matt van de Rijn, C Blake Gilks
Publicado no PLoS ONE (2009-10-01)

SMURF1 amplification promotes invasiveness in pancreatic cancer.

Por Kevin A Kwei, A Hunter Shain, Ryan Bair, Kelli Montgomery, Collins A Karikari, Matt van de Rijn, Manuel Hidalgo, Anirban Maitra, Murali D Bashyam, Jonathan R Pollack
Publicado no PLoS ONE (2011-01-01)

Tissue-Specific Expression of the Low-Affinity IgG Receptor, FcγRIIb, on Human Mast Cells

Por Oliver T. Burton, Alexandra Epp, Manoussa E. Fanny, Samuel J. Miller, Amanda J. Stranks, Jessica E. Teague, Rachael A. Clark, Matt van de Rijn, Hans C. Oettgen
Publicado no Frontiers in Immunology (2018-06-01)

Gene expression signature of fibroblast serum response predicts human cancer progression: similarities between tumors and wounds.

Por Howard Y Chang, Julie B Sneddon, Ash A Alizadeh, Ruchira Sood, Rob B West, Kelli Montgomery, Jen-Tsan Chi, Matt van de Rijn, David Botstein, Patrick O Brown
Publicado no PLoS Biology (2004-02-01)

Gene expression programs of human smooth muscle cells: tissue-specific differentiation and prognostic significance in breast cancers.

Por Jen-Tsan Chi, Edwin H Rodriguez, Zhen Wang, Dimitry S A Nuyten, Sayan Mukherjee, Matt van de Rijn, Marc J van de Vijver, Trevor Hastie, Patrick O Brown
Publicado no PLoS Genetics (2007-09-01)

3'-end sequencing for expression quantification (3SEQ) from archival tumor samples.

Por Andrew H Beck, Ziming Weng, Daniela M Witten, Shirley Zhu, Joseph W Foley, Phil Lacroute, Cheryl L Smith, Robert Tibshirani, Matt van de Rijn, Arend Sidow, Robert B West
Publicado no PLoS ONE (2010-01-01)

Comparative profiling of primary colorectal carcinomas and liver metastases identifies LEF1 as a prognostic biomarker.

Por Albert Y Lin, Mei-Sze Chua, Yoon-La Choi, William Yeh, Young H Kim, Raymond Azzi, Gregg A Adams, Kristin Sainani, Matt van de Rijn, Samuel K So, Jonathan R Pollack
Publicado no PLoS ONE (2011-02-01)

SCAN-ACT: adoptive T cell therapy target discovery through single-cell transcriptomics

Por Stefano Testa, Aastha Pal, Ajay Subramanian, Sushama Varma, Jack Pengfei Tang, Danielle Graham, Sara Arfan, Minggui Pan, Nam Q. Bui, Kristen N. Ganjoo, Sarah Dry, Paul Huang, Matt van de Rijn, Wei Jiang, Anusha Kalbasi, Everett J. Moding
Publicado no Genome Medicine (2025-08-01)

Post-transcriptional dysregulation by miRNAs is implicated in the pathogenesis of gastrointestinal stromal tumor [GIST].

Por Lorna Kelly, Kenneth Bryan, Su Young Kim, Katherine A Janeway, J Keith Killian, Hans-Ulrich Schildhaus, Markku Miettinen, Lee Helman, Paul S Meltzer, Matt van de Rijn, Maria Debiec-Rychter, Maureen O'Sullivan, NIH Pediatric and Wild-Type GIST Clinic
Publicado no PLoS ONE (2013-01-01)

Determination of stromal signatures in breast carcinoma.

Por Robert B West, Dimitry S A Nuyten, Subbaya Subramanian, Torsten O Nielsen, Christopher L Corless, Brian P Rubin, Kelli Montgomery, Shirley Zhu, Rajiv Patel, Tina Hernandez-Boussard, John R Goldblum, Patrick O Brown, Marc van de Vijver, Matt van de Rijn
Publicado no PLoS Biology (2005-06-01)

Brief Report: High Levels of CD47 Expression in Thymic Epithelial Tumors

Por Thomas Yang Sun, MD, MHS, Brandon Nguyen, BA, Simon B. Chen, MD, Yasodha Natkunam, MD, PhD, Sukhmani Padda, MD, Matt van de Rijn, MD, Robert West, MD, PhD, Joel W. Neal, MD, PhD, Heather Wakelee, MD, Jonathan W. Riess, MD, MS
Publicado no JTO Clinical and Research Reports (2023-04-01)

Genomic profiling identifies GATA6 as a candidate oncogene amplified in pancreatobiliary cancer.

Por Kevin A Kwei, Murali D Bashyam, Jessica Kao, Raman Ratheesh, Edumakanti C Reddy, Young H Kim, Kelli Montgomery, Craig P Giacomini, Yoon-La Choi, Sreejata Chatterjee, Collins A Karikari, Keyan Salari, Pei Wang, Tina Hernandez-Boussard, Gowrishankar Swarnalata, Matt van de Rijn, Anirban Maitra, Jonathan R Pollack
Publicado no PLoS Genetics (2008-05-01)

Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types.

Por Craig P Giacomini, Steven Sun, Sushama Varma, A Hunter Shain, Marilyn M Giacomini, Jay Balagtas, Robert T Sweeney, Everett Lai, Catherine A Del Vecchio, Andrew D Forster, Nicole Clarke, Kelli D Montgomery, Shirley Zhu, Albert J Wong, Matt van de Rijn, Robert B West, Jonathan R Pollack
Publicado no PLoS Genetics (2013-04-01)