Bibliotecas PUC-SP - Busca Integrada

PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly

af Maxime Borry, Alexander Hübner, Adam B. Rohrlach, Christina Warinner
Udgivet i PeerJ (2021-07-01)

Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager

af James A. Fellows Yates, Thiseas C. Lamnidis, Maxime Borry, Aida Andrades Valtueña, Zandra Fagernäs, Stephen Clayton, Maxime U. Garcia, Judith Neukamm, Alexander Peltzer
Udgivet i PeerJ (2021-03-01)

Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir

af James A. Fellows Yates, Aida Andrades Valtueña, Åshild J. Vågene, Becky Cribdon, Irina M. Velsko, Maxime Borry, Miriam J. Bravo-Lopez, Antonio Fernandez-Guerra, Eleanor J. Green, Shreya L. Ramachandran, Peter D. Heintzman, Maria A. Spyrou, Alexander Hübner, Abigail S. Gancz, Jessica Hider, Aurora F. Allshouse, Valentina Zaro, Christina Warinner
Udgivet i Scientific Data (2021-01-01)

CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content

af Maxime Borry, Bryan Cordova, Angela Perri, Marsha Wibowo, Tanvi Prasad Honap, Jada Ko, Jie Yu, Kate Britton, Linus Girdland-Flink, Robert C. Power, Ingelise Stuijts, Domingo C. Salazar-García, Courtney Hofman, Richard Hagan, Thérèse Samdapawindé Kagoné, Nicolas Meda, Helene Carabin, David Jacobson, Karl Reinhard, Cecil Lewis, Aleksandar Kostic, Choongwon Jeong, Alexander Herbig, Alexander Hübner, Christina Warinner
Udgivet i PeerJ (2020-04-01)

Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT [version 2; peer review: 1 approved, 2 approved with reservations]

af Olivia S. Smith, Ophélie Lebrasseur, Nihan D. Dagtas, Nikolay Oskolkov, Miriam J. Bravo-Lopez, Mohamed S. Sarhan, Megan Michel, Meriam van Os, Maria Lopopolo, Markella Moraitou, Kelly E. Blevins, Kevin G. Daly, Julien Fumey, Kadir T. Özdoğan, Jasmin Frangenberg, Javier G. Serrano, James A. Fellows Yates, Valentina Vanghi, Christina Warinner, Sally Wasef, Shreya L. Ramachandran, Piotr Rozwalak, Raphael Eisenhofer, Maxime Borry, Irina M. Velsko, Iseult Jackson, I-Ting Huang, Ian Light, Gabriel Yaxal Ponce-Soto, Gunnar Neumann, Bjørn Peare Bartholdy, Diāna Spurīte, Arthur Kocher, Åshild J. Vågene‬, Andrea Quagliariello, Anna E. White, Alexander Hübner, Anan Ibrahim, Adrian Forsythe, Aida Andrades Valtueña
Udgivet i F1000Research (2024-05-01)