Bibliotecas PUC-SP - Busca Integrada

Assessing the performance of methods for copy number aberration detection from single-cell DNA sequencing data.

Por Xian F Mallory, Mohammadamin Edrisi, Nicholas Navin, Luay Nakhleh
Publicado no PLoS Computational Biology (2020-07-01)

Methods for copy number aberration detection from single-cell DNA-sequencing data

Por Xian F. Mallory, Mohammadamin Edrisi, Nicholas Navin, Luay Nakhleh
Publicado no Genome Biology (2020-08-01)

SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models

Por Hamim Zafar, Anthony Tzen, Nicholas Navin, Ken Chen, Luay Nakhleh
Publicado no Genome Biology (2017-09-01)

SCMarker: Ab initio marker selection for single cell transcriptome profiling.

Por Fang Wang, Shaoheng Liang, Tapsi Kumar, Nicholas Navin, Ken Chen
Publicado no PLoS Computational Biology (2019-10-01)

Comments on the model parameters in “SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models”

Por Hamim Zafar, Anthony Tzen, Nicholas Navin, Ken Chen, Luay Nakhleh
Publicado no Genome Biology (2019-05-01)

833 The epigenomic landscape of human glioma-associated myeloid cells

Por Linghua Wang, Tuan Tran, Dapeng Hao, Pravesh Gupta, Krishna Bojja Bojja, Minghao Dang, Jianzhuo Li, Atul Maheshwari, Nicholas Navin, Krishna Bhat
Publicado no Journal for ImmunoTherapy of Cancer (2020-11-01)

Nanogrid single-nucleus RNA sequencing reveals phenotypic diversity in breast cancer

Por Ruli Gao, Charissa Kim, Emi Sei, Theodoros Foukakis, Nicola Crosetto, Leong-Keat Chan, Maithreyan Srinivasan, Hong Zhang, Funda Meric-Bernstam, Nicholas Navin
Publicado no Nature Communications (2017-08-01)

MEDALT: single-cell copy number lineage tracing enabling gene discovery

Por Fang Wang, Qihan Wang, Vakul Mohanty, Shaoheng Liang, Jinzhuang Dou, Jincheng Han, Darlan Conterno Minussi, Ruli Gao, Li Ding, Nicholas Navin, Ken Chen
Publicado no Genome Biology (2021-02-01)

MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution

Por Tom L. Kaufmann, Marina Petkovic, Thomas B. K. Watkins, Emma C. Colliver, Sofya Laskina, Nisha Thapa, Darlan C. Minussi, Nicholas Navin, Charles Swanton, Peter Van Loo, Kerstin Haase, Maxime Tarabichi, Roland F. Schwarz
Publicado no Genome Biology (2022-11-01)

Anaplastic transformation in thyroid cancer revealed by single-cell transcriptomics

Por Lina Lu, Jennifer Rui Wang, Ying C. Henderson, Shanshan Bai, Jie Yang, Min Hu, Cheng-Kai Shiau, Timothy Pan, Yuanqing Yan, Tuan M. Tran, Jianzhuo Li, Rachel Kieser, Xiao Zhao, Jiping Wang, Roza Nurieva, Michelle D. Williams, Maria E. Cabanillas, Ramona Dadu, Naifa Lamki Busaidy, Mark Zafereo, Nicholas Navin, Stephen Y. Lai, Ruli Gao
Publicado no The Journal of Clinical Investigation (2023-06-01)

Transient commensal clonal interactions can drive tumor metastasis

Por Suha Naffar-Abu Amara, Hendrik J. Kuiken, Laura M. Selfors, Timothy Butler, Marco L. Leung, Cheuk T. Leung, Elaine P. Kuhn, Teodora Kolarova, Carina Hage, Kripa Ganesh, Richard Panayiotou, Rosemary Foster, Bo R. Rueda, Athena Aktipis, Paul Spellman, Tan A. Ince, Joanne Xiu, Matthew Oberley, Zoran Gatalica, Nicholas Navin, Gordon B. Mills, Rodrick T. Bronson, Joan S. Brugge
Publicado no Nature Communications (2020-11-01)

Mesenchymal and stem-like prostate cancer linked to therapy-induced lineage plasticity and metastasis

Por Hyunho Han, Yan Wang, Josue Curto, Sreeharsha Gurrapu, Sara Laudato, Alekya Rumandla, Goutam Chakraborty, Xiaobo Wang, Hong Chen, Yan Jiang, Dhiraj Kumar, Emily G. Caggiano, Monica Capogiri, Boyu Zhang, Yan Ji, Sankar N. Maity, Min Hu, Shanshan Bai, Ana M. Aparicio, Eleni Efstathiou, Christopher J. Logothetis, Nicholas Navin, Nora M. Navone, Yu Chen, Filippo G. Giancotti
Publicado no Cell Reports (2022-04-01)

Author Correction: Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics

Por Kiyomi Morita, Feng Wang, Katharina Jahn, Tianyuan Hu, Tomoyuki Tanaka, Yuya Sasaki, Jack Kuipers, Sanam Loghavi, Sa A. Wang, Yuanqing Yan, Ken Furudate, Jairo Matthews, Latasha Little, Curtis Gumbs, Jianhua Zhang, Xingzhi Song, Erika Thompson, Keyur P. Patel, Carlos E. Bueso-Ramos, Courtney D. DiNardo, Farhad Ravandi, Elias Jabbour, Michael Andreeff, Jorge Cortes, Kapil Bhalla, Guillermo Garcia-Manero, Hagop Kantarjian, Marina Konopleva, Daisuke Nakada, Nicholas Navin, Niko Beerenwinkel, P. Andrew Futreal, Koichi Takahashi
Publicado no Nature Communications (2021-05-01)

Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics

Por Kiyomi Morita, Feng Wang, Katharina Jahn, Tianyuan Hu, Tomoyuki Tanaka, Yuya Sasaki, Jack Kuipers, Sanam Loghavi, Sa A. Wang, Yuanqing Yan, Ken Furudate, Jairo Matthews, Latasha Little, Curtis Gumbs, Jianhua Zhang, Xingzhi Song, Erika Thompson, Keyur P. Patel, Carlos E. Bueso-Ramos, Courtney D. DiNardo, Farhad Ravandi, Elias Jabbour, Michael Andreeff, Jorge Cortes, Kapil Bhalla, Guillermo Garcia-Manero, Hagop Kantarjian, Marina Konopleva, Daisuke Nakada, Nicholas Navin, Niko Beerenwinkel, P. Andrew Futreal, Koichi Takahashi
Publicado no Nature Communications (2020-10-01)

Publisher Correction: Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics

Por Kiyomi Morita, Feng Wang, Katharina Jahn, Tianyuan Hu, Tomoyuki Tanaka, Yuya Sasaki, Jack Kuipers, Sanam Loghavi, Sa A. Wang, Yuanqing Yan, Ken Furudate, Jairo Matthews, Latasha Little, Curtis Gumbs, Jianhua Zhang, Xingzhi Song, Erika Thompson, Keyur P. Patel, Carlos E. Bueso-Ramos, Courtney D. DiNardo, Farhad Ravandi, Elias Jabbour, Michael Andreeff, Jorge Cortes, Kapil Bhalla, Guillermo Garcia-Manero, Hagop Kantarjian, Marina Konopleva, Daisuke Nakada, Nicholas Navin, Niko Beerenwinkel, P. Andrew Futreal, Koichi Takahashi
Publicado no Nature Communications (2020-11-01)

Spatially resolved analyses link genomic and immune diversity and reveal unfavorable neutrophil activation in melanoma

Por Akash Mitra, Miles C. Andrews, Whijae Roh, Marianna Petaccia De Macedo, Courtney W. Hudgens, Fernando Carapeto, Shailbala Singh, Alexandre Reuben, Feng Wang, Xizeng Mao, Xingzhi Song, Khalida Wani, Samantha Tippen, Kwok-Shing Ng, Aislyn Schalck, Donald A. Sakellariou-Thompson, Eveline Chen, Sangeetha M. Reddy, Christine N. Spencer, Diana Wiesnoski, Latasha D. Little, Curtis Gumbs, Zachary A. Cooper, Elizabeth M. Burton, Patrick Hwu, Michael A. Davies, Jianhua Zhang, Chantale Bernatchez, Nicholas Navin, Padmanee Sharma, James P. Allison, Jennifer A. Wargo, Cassian Yee, Michael T. Tetzlaff, Wen-Jen Hwu, Alexander J. Lazar, P. Andrew Futreal
Publicado no Nature Communications (2020-04-01)

Deep learning for predicting invasive recurrence of ductal carcinoma in situ: leveraging histopathology images and clinical featuresResearch in context

Por Shannon Doyle, Esther H. Lips, Eric Marcus, Lennart Mulder, Yat-Hee Liu, Francesco Dal Canton, Timo Kootstra, Maartje M. van Seijen, Ihssane Bouybayoune, Elinor J. Sawyer, Alastair M. Thompson, Sarah E. Pinder, Clara I. Sánchez, Jonas Teuwen, Jelle Wesseling, Jelle Wesseling, Jos Jonkers, Jacco van Rheenen, Esther H. Lips, Marjanka Schmidt, Lodewyk F.A. Wessels, Proteeti Bhattacharjee, Alastair Thompson, Serena Nik-Zainal, Helen Davies, Elinor J. Sawyer, Andrew Futreal, Nicholas Navin, E. Shelley Hwang, Fariba Behbod, Daniel Rea, Hilary Stobart, Deborah Collyar, Donna Pinto, Ellen Verschuur, Marja van Oirsouw
Publicado no EBioMedicine (2025-06-01)

DCIS knowledge of women choosing between active surveillance and surgery for low-risk DCIS

Por E.G. Engelhardt, R.S.J.M. Schmitz, M.A. Gerritsma, C.M.T. Sondermeijer, E. Verschuur, J.H.E. Houtzager, R. Griffioen, N. Bijker, R.M. Mann, V. Retèl, F.H. van Duijnhoven, J. Wesseling, E.M.A. Bleiker, Alastair Thompson, Serena Nik-Zainal, Elinor J. Sawyer, Helen Davies, Andrew Futreal, Nicholas Navin, E. Shelley Hwang, Jos Jonkers, Jacco van Rheenen, Fariba Behbod, Esther H. Lips, Marjanka Schmidt, Lodewyk F.A. Wessels, Daniel Rea, Proteeti Bhattacharjee, Hilary Stobart, Deborah Collyar, Donna Pinto, Marja van Oirsouw, S. Alaeikhanehshir, L. Elshof
Publicado no Breast (2024-10-01)