Bibliotecas PUC-SP - Busca Integrada

Metagenomic analysis of microbe-mediated vitamin metabolism in the human gut microbiome

Por Promi Das, Parizad Babaei, Jens Nielsen
Publicado no BMC Genomics (2019-03-01)

Metagenomic analysis of bile salt biotransformation in the human gut microbiome

Por Promi Das, Simonas Marcišauskas, Boyang Ji, Jens Nielsen
Publicado no BMC Genomics (2019-06-01)

In vitro co-cultures of human gut bacterial species as predicted from co-occurrence network analysis.

Por Promi Das, Boyang Ji, Petia Kovatcheva-Datchary, Fredrik Bäckhed, Jens Nielsen
Publicado no PLoS ONE (2018-01-01)

Conceptual strategies for characterizing interactions in microbial communities

Por Sho M. Kodera, Promi Das, Jack A. Gilbert, Holly L. Lutz
Publicado no iScience (2022-02-01)

Effects of ‘Healthy’ Fecal Microbiota Transplantation against the Deterioration of Depression in Fawn-Hooded Rats

Por Bing Hu, Promi Das, Xianglin Lv, Meng Shi, Jiye Aa, Kun Wang, Liping Duan, Jack A. Gilbert, Yong Nie, Xiao-Lei Wu
Publicado no mSystems (2022-06-01)

Erratum for Hu et al., “Effects of ‘Healthy’ Fecal Microbiota Transplantation against the Deterioration of Depression in Fawn-Hooded Rats”

Por Bing Hu, Promi Das, Xianglin Lv, Meng Shi, Jiye Aa, Kun Wang, Liping Duan, Jack A. Gilbert, Yong Nie, Xiao-Lei Wu
Publicado no mSystems (2022-12-01)

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy

Por Qiyun Zhu, Shi Huang, Antonio Gonzalez, Imran McGrath, Daniel McDonald, Niina Haiminen, George Armstrong, Yoshiki Vázquez-Baeza, Julian Yu, Justin Kuczynski, Gregory D. Sepich-Poore, Austin D. Swafford, Promi Das, Justin P. Shaffer, Franck Lejzerowicz, Pedro Belda-Ferre, Aki S. Havulinna, Guillaume Méric, Teemu Niiranen, Leo Lahti, Veikko Salomaa, Ho-Cheol Kim, Mohit Jain, Michael Inouye, Jack A. Gilbert, Rob Knight
Publicado no mSystems (2022-04-01)

Correction for Zhu et al., “Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy”

Por Qiyun Zhu, Shi Huang, Antonio Gonzalez, Imran McGrath, Daniel McDonald, Niina Haiminen, George Armstrong, Yoshiki Vázquez-Baeza, Julian Yu, Justin Kuczynski, Gregory D. Sepich-Poore, Austin D. Swafford, Promi Das, Justin P. Shaffer, Franck Lejzerowicz, Pedro Belda-Ferre, Aki S. Havulinna, Guillaume Méric, Teemu Niiranen, Leo Lahti, Veikko Salomaa, Ho-Cheol Kim, Mohit Jain, Michael Inouye, Jack A. Gilbert, Rob Knight
Publicado no mSystems (2024-11-01)

A three-country analysis of the gut microbiome indicates taxon associations with diet vary by taxon resolution and population

Por Lora Khatib, Se Jin Song, Amanda H. Dilmore, Jon G. Sanders, Caitriona Brennan, Alejandra Rios Hernandez, Tyler Myers, Renee Oles, Sawyer Farmer, Charles Cowart, Amanda Birmingham, Edgar A. Diaz, Oliver Nizet, Kat Gilbert, Nicole Litwin, Promi Das, Brent Nowinski, Mackenzie Bryant, Caitlin Tribelhorn, Karenina Sanders-Bodai, Soline Chaumont, Jan Knol, Guus Roeselers, Manolo Laiola, Sudarshan A. Shetty, Patrick Veiga, Julien Tap, Muriel Derrien, Hana Koutnikova, Aurélie Cotillard, Christophe Lay, Armando R. Tovar, Nimbe Torres, Liliana Arteaga, Antonio González, Daniel McDonald, Andrew Bartko, Rob Knight
Publicado no mSystems (2025-07-01)

SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment

Por Clarisse Marotz, Pedro Belda-Ferre, Farhana Ali, Promi Das, Shi Huang, Kalen Cantrell, Lingjing Jiang, Cameron Martino, Rachel E. Diner, Gibraan Rahman, Daniel McDonald, George Armstrong, Sho Kodera, Sonya Donato, Gertrude Ecklu-Mensah, Neil Gottel, Mariana C. Salas Garcia, Leslie Y. Chiang, Rodolfo A. Salido, Justin P. Shaffer, Mac Kenzie Bryant, Karenina Sanders, Greg Humphrey, Gail Ackermann, Niina Haiminen, Kristen L. Beck, Ho-Cheol Kim, Anna Paola Carrieri, Laxmi Parida, Yoshiki Vázquez-Baeza, Francesca J. Torriani, Rob Knight, Jack Gilbert, Daniel A. Sweeney, Sarah M. Allard
Publicado no Microbiome (2021-06-01)

SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx

Por Cameron Martino, Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Robert Cooper, Alhosna Benjdia, Feryel Soualmia, Alex E. Clark, Aaron F. Garretson, Clarisse A. Marotz, Se Jin Song, Stephen Wandro, Livia S. Zaramela, Rodolfo A. Salido, Qiyun Zhu, Erick Armingol, Yoshiki Vázquez-Baeza, Daniel McDonald, James T. Sorrentino, Bryn Taylor, Pedro Belda-Ferre, Promi Das, Farhana Ali, Chenguang Liang, Yujie Zhang, Luca Schifanella, Alice Covizzi, Alessia Lai, Agostino Riva, Christopher Basting, Courtney Ann Broedlow, Aki S. Havulinna, Pekka Jousilahti, Mehrbod Estaki, Tomasz Kosciolek, Rayus Kuplicki, Teresa A. Victor, Martin P. Paulus, Kristen E. Savage, Jennifer L. Benbow, Emma S. Spielfogel, Cheryl A. M. Anderson, Maria Elena Martinez, James V. Lacey, Shi Huang, Niina Haiminen, Laxmi Parida, Ho-Cheol Kim, Jack A. Gilbert, Daniel A. Sweeney, Sarah M. Allard, Austin D. Swafford, Susan Cheng, Michael Inouye, Teemu Niiranen, Mohit Jain, Veikko Salomaa, Karsten Zengler, Nichole R. Klatt, Jeff Hasty, Olivier Berteau, Aaron F. Carlin, Jeffrey D. Esko, Nathan E. Lewis, Rob Knight
Publicado no mBio (2025-04-01)