Bibliotecas PUC-SP - Busca Integrada

Interpretable and context-free deconvolution of multi-scale whole transcriptomic data with UniCell deconvolve

Por Daniel Charytonowicz, Rachel Brody, Robert Sebra
Publicado no Nature Communications (2023-03-01)

Using single-cell multiple omics approaches to resolve tumor heterogeneity

Por Michael A. Ortega, Olivier Poirion, Xun Zhu, Sijia Huang, Thomas K. Wolfgruber, Robert Sebra, Lana X. Garmire
Publicado no Clinical and Translational Medicine (2017-12-01)

Single-Molecule Real-Time (SMRT) Full-Length RNA-Sequencing Reveals Novel and Distinct mRNA Isoforms in Human Bone Marrow Cell Subpopulations

Por Anne Deslattes Mays, Marcel Schmidt, Garrett Graham, Elizabeth Tseng, Primo Baybayan, Robert Sebra, Miloslav Sanda, Jean-Baptiste Mazarati, Anna Riegel, Anton Wellstein
Publicado no Genes (2019-03-01)

A Novel Framework for Characterizing Genomic Haplotype Diversity in the Human Immunoglobulin Heavy Chain Locus

Por Oscar L. Rodriguez, William S. Gibson, Tom Parks, Matthew Emery, James Powell, Maya Strahl, Gintaras Deikus, Kathryn Auckland, Evan E. Eichler, Evan E. Eichler, Wayne A. Marasco, Robert Sebra, Robert Sebra, Andrew J. Sharp, Melissa L. Smith, Melissa L. Smith, Melissa L. Smith, Ali Bashir, Corey T. Watson
Publicado no Frontiers in Immunology (2020-09-01)

Long read, isoform aware sequencing of mouse nucleus accumbens after chronic cocaine treatment

Por Molly Estill, Efrain Ribeiro, Nancy J. Francoeur, Melissa L. Smith, Robert Sebra, Szu-Ying Yeh, Ashley M. Cunningham, Eric J. Nestler, Li Shen
Publicado no Scientific Reports (2021-03-01)

Cell-to-Cell Variation in Defective Virus Expression and Effects on Host Responses during Influenza Virus Infection

Por Chang Wang, Christian V. Forst, Tsui-wen Chou, Adam Geber, Minghui Wang, Wissam Hamou, Melissa Smith, Robert Sebra, Bin Zhang, Bin Zhou, Elodie Ghedin
Publicado no mBio (2020-02-01)

Intrahost Dynamics of Antiviral Resistance in Influenza A Virus Reflect Complex Patterns of Segment Linkage, Reassortment, and Natural Selection

Por Matthew B. Rogers, Timothy Song, Robert Sebra, Benjamin D. Greenbaum, Marie-Eve Hamelin, Adam Fitch, Alan Twaddle, Lijia Cui, Edward C. Holmes, Guy Boivin, Elodie Ghedin
Publicado no mBio (2015-05-01)

LINE-1 promotes tumorigenicity and exacerbates tumor progression via stimulating metabolism reprogramming in non-small cell lung cancer

Por Zeguo Sun, Rui Zhang, Xiao Zhang, Yifei Sun, Pengpeng Liu, Nancy Francoeur, Lei Han, Wan Yee Lam, Zhengzi Yi, Robert Sebra, Martin Walsh, Jinpu Yu, Weijia Zhang
Publicado no Molecular Cancer (2022-07-01)

Limited Mitochondrial Activity Coupled With Strong Expression of CD34, CD90 and EPCR Determines the Functional Fitness of ex vivo Expanded Human Hematopoietic Stem Cells

Por Luena Papa, Mansour Djedaini, Tiphaine C. Martin, Tiphaine C. Martin, Mahtab Zangui, Kristin G. Beaumont, Robert Sebra, Ramon Parsons, Ramon Parsons, Christoph Schaniel, Christoph Schaniel, Christoph Schaniel, Ronald Hoffman
Publicado no Frontiers in Cell and Developmental Biology (2020-12-01)

An atlas of late prenatal human neurodevelopment resolved by single-nucleus transcriptomics

Por Susana I. Ramos, Zarmeen M. Mussa, Elisa N. Falk, Balagopal Pai, Bruno Giotti, Kimaada Allette, Peiwen Cai, Fumiko Dekio, Robert Sebra, Kristin G. Beaumont, Alexander M. Tsankov, Nadejda M. Tsankova
Publicado no Nature Communications (2022-12-01)

Spinal cord injury regulates circular RNA expression in axons

Por Mustafa M. Siddiq, Carlos A. Toro, Carlos A. Toro, Nicholas P. Johnson, Jens Hansen, Yuguang Xiong, Wilfredo Mellado, Rosa E. Tolentino, Kaitlin Johnson, Gomathi Jayaraman, Zaara Suhail, Lauren Harlow, Lauren Harlow, Jinye Dai, Jinye Dai, Jinye Dai, Kristin G. Beaumont, Kristin G. Beaumont, Robert Sebra, Robert Sebra, Dianna E. Willis, Dianna E. Willis, Christopher P. Cardozo, Christopher P. Cardozo, Christopher P. Cardozo, Ravi Iyengar
Publicado no Frontiers in Molecular Neuroscience (2023-08-01)

Single-cell transcriptomic-informed deconvolution of bulk data identifies immune checkpoint blockade resistance in urothelial cancer

Por Li Wang, Sudeh Izadmehr, John P. Sfakianos, Michelle Tran, Kristin G. Beaumont, Rachel Brody, Carlos Cordon-Cardo, Amir Horowitz, Robert Sebra, William K. Oh, Nina Bhardwaj, Matthew D. Galsky, Jun Zhu
Publicado no iScience (2024-06-01)

The genome of a subterrestrial nematode reveals adaptations to heat

Por Deborah J. Weinstein, Sarah E. Allen, Maggie C. Y. Lau, Mariana Erasmus, Kathryn C. Asalone, Kathryn Walters-Conte, Gintaras Deikus, Robert Sebra, Gaetan Borgonie, Esta van Heerden, Tullis C. Onstott, John R. Bracht
Publicado no Nature Communications (2019-11-01)

Prospective Isolation and Comparison of Human Germinal Matrix and Glioblastoma EGFR+ Populations with Stem Cell Properties

Por Jessica Tome-Garcia, Rut Tejero, German Nudelman, Raymund L. Yong, Robert Sebra, Huaien Wang, Mary Fowkes, Margret Magid, Martin Walsh, Violeta Silva-Vargas, Elena Zaslavsky, Roland H. Friedel, Fiona Doetsch, Nadejda M. Tsankova
Publicado no Stem Cell Reports (2017-05-01)

Epigenetic Switch Driven by DNA Inversions Dictates Phase Variation in Streptococcus pneumoniae.

Por Jing Li, Jing-Wen Li, Zhixing Feng, Juanjuan Wang, Haoran An, Yanni Liu, Yang Wang, Kailing Wang, Xuegong Zhang, Zhun Miao, Wenbo Liang, Robert Sebra, Guilin Wang, Wen-Ching Wang, Jing-Ren Zhang
Publicado no PLoS Pathogens (2016-07-01)

Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis

Por Sayed Mohammad Ebrahim Sahraeian, Marghoob Mohiyuddin, Robert Sebra, Hagen Tilgner, Pegah T. Afshar, Kin Fai Au, Narges Bani Asadi, Mark B. Gerstein, Wing Hung Wong, Michael P. Snyder, Eric Schadt, Hugo Y. K. Lam
Publicado no Nature Communications (2017-07-01)

ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms

Por Gloria M. Sheynkman, Katharine S. Tuttle, Florent Laval, Elizabeth Tseng, Jason G. Underwood, Liang Yu, Da Dong, Melissa L. Smith, Robert Sebra, Luc Willems, Tong Hao, Michael A. Calderwood, David E. Hill, Marc Vidal
Publicado no Nature Communications (2020-05-01)

Permethrin exposure primes neuroinflammatory stress response to drive depression-like behavior through microglial activation in a mouse model of Gulf War Illness

Por Sean X. Naughton, Eun-Jeong Yang, Umar Iqbal, Kyle Trageser, Daniel Charytonowicz, Sibilla Masieri, Molly Estill, Henry Wu, Urdhva Raval, Weiting Lyu, Qing-li Wu, Li Shen, James Simon, Robert Sebra, Giulio Maria Pasinetti
Publicado no Journal of Neuroinflammation (2024-09-01)

Protective lipid-lowering variants in healthy older individuals without coronary heart disease

Por Andrew Tonkin, John J McNeil, Sophia Zoungas, Galina Polekhina, Chris Reid, Eric Schadt, Jing Pang, Paul Lacaze, Stephen Nicholls, Jane Tiller, Robert Sebra, Moeen Riaz, Amanda J Hooper, Anne M Murray, Gerald Watts
Publicado no Open Heart (2021-12-01)

Genetic variants associated with inherited cardiovascular disorders among 13,131 asymptomatic older adults of European descent

Por Paul Lacaze, Robert Sebra, Moeen Riaz, Jodie Ingles, Jane Tiller, Bryony A. Thompson, Paul A. James, Diane Fatkin, Christopher Semsarian, Christopher M. Reid, Andrew M. Tonkin, Ingrid Winship, Eric Schadt, John J. McNeil
Publicado no npj Genomic Medicine (2021-06-01)