Bibliotecas PUC-SP - Busca Integrada

CauseMap: fast inference of causality from complex time series

Por M. Cyrus Maher, Ryan D. Hernandez
Publicado no PeerJ (2015-03-01)

Human demographic history has amplified the effects of background selection across the genome.

Por Raul Torres, Zachary A Szpiech, Ryan D Hernandez
Publicado no PLoS Genetics (2018-06-01)

Correction: Human demographic history has amplified the effects of background selection across the genome.

Por Raul Torres, Zachary A Szpiech, Ryan D Hernandez
Publicado no PLoS Genetics (2019-01-01)

A population genetics-phylogenetics approach to inferring natural selection in coding sequences.

Por Daniel J Wilson, Ryan D Hernandez, Peter Andolfatto, Molly Przeworski
Publicado no PLoS Genetics (2011-12-01)

Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data.

Por Ryan N Gutenkunst, Ryan D Hernandez, Scott H Williamson, Carlos D Bustamante
Publicado no PLoS Genetics (2009-10-01)

Effect of different ankle joint positions on medial gastrocnemius muscle fiber strains during isometric plantarflexion

Por Brandon T. Cunnane, Usha Sinha, Vadim Malis, Ryan D. Hernandez, Edward Smitaman, Shantanu Sinha
Publicado no Scientific Reports (2023-09-01)

The Urinary Metabolomic Fingerprint in Extremely Preterm Infants on Total Parenteral Nutrition vs. Enteral Feeds

Por Miguel Guardado, Martina Steurer, Cheryl Chapin, Ryan D. Hernandez, Philip L. Ballard, Dara Torgerson
Publicado no Metabolites (2023-08-01)

Recent shifts in the genomic ancestry of Mexican Americans may alter the genetic architecture of biomedical traits

Por Melissa L Spear, Alex Diaz-Papkovich, Elad Ziv, Joseph M Yracheta, Simon Gravel, Dara G Torgerson, Ryan D Hernandez
Publicado no eLife (2020-12-01)

Prominent features of the amino acid mutation landscape in cancer.

Por Zachary A Szpiech, Nicolas B Strauli, Katharine A White, Diego Garrido Ruiz, Matthew P Jacobson, Diane L Barber, Ryan D Hernandez
Publicado no PLoS ONE (2017-01-01)

PROPEL: a scalable model for postbaccalaureate training to promote diversity in the biomedical workforce

Por Jessica Allen, Ekland Abdiwahab, Meghan D. Morris, Claude Jourdan Le Saux, Paola Betancur, K. Mark Ansel, Ryan D. Hernandez, Todd G. Nystul
Publicado no Journal of Microbiology & Biology Education (2024-12-01)

py_ped_sim: a flexible forward pedigree and genetic simulator for complex family pedigree analysis

Por Miguel Guardado, Cynthia Perez, Sthen Campana, Berenice Chavez Rojas, Joaquín Magaña, Shalom Jackson, Emily Samperio, Selena Hernandez, Kaela Syas, Ryan D. Hernandez, Elena I. Zavala, Rori V. Rohlfs
Publicado no BMC Bioinformatics (2025-05-01)

Evolutionary processes acting on candidate cis-regulatory regions in humans inferred from patterns of polymorphism and divergence.

Por Dara G Torgerson, Adam R Boyko, Ryan D Hernandez, Amit Indap, Xiaolan Hu, Thomas J White, John J Sninsky, Michele Cargill, Mark D Adams, Carlos D Bustamante, Andrew G Clark
Publicado no PLoS Genetics (2009-08-01)

Genome-wide patterns of nucleotide polymorphism in domesticated rice.

Por Ana L Caicedo, Scott H Williamson, Ryan D Hernandez, Adam Boyko, Adi Fledel-Alon, Thomas L York, Nicholas R Polato, Kenneth M Olsen, Rasmus Nielsen, Susan R McCouch, Carlos D Bustamante, Michael D Purugganan
Publicado no PLoS Genetics (2007-09-01)

Pooled Sequencing of Candidate Genes Implicates Rare Variants in the Development of Asthma Following Severe RSV Bronchiolitis in Infancy.

Por Dara G Torgerson, Tusar Giri, Todd E Druley, Jie Zheng, Scott Huntsman, Max A Seibold, Andrew L Young, Toni Schweiger, Huiqing Yin-Declue, Geneline D Sajol, Kenneth B Schechtman, Ryan D Hernandez, Adrienne G Randolph, Leonard B Bacharier, Mario Castro
Publicado no PLoS ONE (2015-01-01)

Assessing the evolutionary impact of amino acid mutations in the human genome.

Por Adam R Boyko, Scott H Williamson, Amit R Indap, Jeremiah D Degenhardt, Ryan D Hernandez, Kirk E Lohmueller, Mark D Adams, Steffen Schmidt, John J Sninsky, Shamil R Sunyaev, Thomas J White, Rasmus Nielsen, Andrew G Clark, Carlos D Bustamante
Publicado no PLoS Genetics (2008-05-01)

ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues

Por Serghei Mangul, Harry Taegyun Yang, Nicolas Strauli, Franziska Gruhl, Hagit T. Porath, Kevin Hsieh, Linus Chen, Timothy Daley, Stephanie Christenson, Agata Wesolowska-Andersen, Roberto Spreafico, Cydney Rios, Celeste Eng, Andrew D. Smith, Ryan D. Hernandez, Roel A. Ophoff, Jose Rodriguez Santana, Erez Y. Levanon, Prescott G. Woodruff, Esteban Burchard, Max A. Seibold, Sagiv Shifman, Eleazar Eskin, Noah Zaitlen
Publicado no Genome Biology (2018-02-01)

A continuum of admixture in the Western Hemisphere revealed by the African Diaspora genome

Por Rasika Ann Mathias, Margaret A. Taub, Christopher R. Gignoux, Wenqing Fu, Shaila Musharoff, Timothy D. O'Connor, Candelaria Vergara, Dara G. Torgerson, Maria Pino-Yanes, Suyash S. Shringarpure, Lili Huang, Nicholas Rafaels, Meher Preethi Boorgula, Henry Richard Johnston, Victor E. Ortega, Albert M. Levin, Wei Song, Raul Torres, Badri Padhukasahasram, Celeste Eng, Delmy-Aracely Mejia-Mejia, Trevor Ferguson, Zhaohui S. Qin, Alan F. Scott, Maria Yazdanbakhsh, James G. Wilson, Javier Marrugo, Leslie A. Lange, Rajesh Kumar, Pedro C. Avila, L. Keoki Williams, Harold Watson, Lorraine B. Ware, Christopher Olopade, Olufunmilayo Olopade, Ricardo Oliveira, Carole Ober, Dan L. Nicolae, Deborah Meyers, Alvaro Mayorga, Jennifer Knight-Madden, Tina Hartert, Nadia N. Hansel, Marilyn G. Foreman, Jean G. Ford, Mezbah U. Faruque, Georgia M. Dunston, Luis Caraballo, Esteban G. Burchard, Eugene Bleecker, Maria Ilma Araujo, Edwin Francisco Herrera-Paz, Kimberly Gietzen, Wendy E. Grus, Michael Bamshad, Carlos D. Bustamante, Eimear E. Kenny, Ryan D. Hernandez, Terri H. Beaty, Ingo Ruczinski, Joshua Akey, CAAPA, Kathleen C. Barnes
Publicado no Nature Communications (2016-10-01)

Association study in African-admixed populations across the Americas recapitulates asthma risk loci in non-African populations

Por Michelle Daya, Nicholas Rafaels, Tonya M. Brunetti, Sameer Chavan, Albert M. Levin, Aniket Shetty, Christopher R. Gignoux, Meher Preethi Boorgula, Genevieve Wojcik, Monica Campbell, Candelaria Vergara, Dara G. Torgerson, Victor E. Ortega, Ayo Doumatey, Henry Richard Johnston, Nathalie Acevedo, Maria Ilma Araujo, Pedro C. Avila, Gillian Belbin, Eugene Bleecker, Carlos Bustamante, Luis Caraballo, Alvaro Cruz, Georgia M. Dunston, Celeste Eng, Mezbah U. Faruque, Trevor S. Ferguson, Camila Figueiredo, Jean G. Ford, Weiniu Gan, Pierre-Antoine Gourraud, Nadia N. Hansel, Ryan D. Hernandez, Edwin Francisco Herrera-Paz, Silvia Jiménez, Eimear E. Kenny, Jennifer Knight-Madden, Rajesh Kumar, Leslie A. Lange, Ethan M. Lange, Antoine Lizee, Pissamai Maul, Trevor Maul, Alvaro Mayorga, Deborah Meyers, Dan L. Nicolae, Timothy D. O’Connor, Ricardo Riccio Oliveira, Christopher O. Olopade, Olufunmilayo Olopade, Zhaohui S. Qin, Charles Rotimi, Nicolas Vince, Harold Watson, Rainford J. Wilks, James G. Wilson, Steven Salzberg, Carole Ober, Esteban G. Burchard, L. Keoki Williams, Terri H. Beaty, Margaret A. Taub, Ingo Ruczinski, Rasika A. Mathias, Kathleen C. Barnes, CAAPA
Publicado no Nature Communications (2019-02-01)

Author Correction: Association study in African-admixed populations across the Americas recapitulates asthma risk loci in non-African populations

Por Michelle Daya, Nicholas Rafaels, Tonya M. Brunetti, Sameer Chavan, Albert M. Levin, Aniket Shetty, Christopher R. Gignoux, Meher Preethi Boorgula, Genevieve Wojcik, Monica Campbell, Candelaria Vergara, Dara G. Torgerson, Victor E. Ortega, Ayo Doumatey, Henry Richard Johnston, Nathalie Acevedo, Maria Ilma Araujo, Pedro C. Avila, Gillian Belbin, Eugene Bleecker, Carlos Bustamante, Luis Caraballo, Alvaro Cruz, Georgia M. Dunston, Celeste Eng, Mezbah U. Faruque, Trevor S. Ferguson, Camila Figueiredo, Jean G. Ford, Weiniu Gan, Pierre-Antoine Gourraud, Nadia N. Hansel, Ryan D. Hernandez, Edwin Francisco Herrera-Paz, Silvia Jiménez, Eimear E. Kenny, Jennifer Knight-Madden, Rajesh Kumar, Leslie A. Lange, Ethan M. Lange, Antoine Lizee, Pissamai Maul, Trevor Maul, Alvaro Mayorga, Deborah Meyers, Dan L. Nicolae, Timothy D. O’Connor, Ricardo Riccio Oliveira, Christopher O. Olopade, Olufunmilayo Olopade, Zhaohui S. Qin, Charles Rotimi, Nicolas Vince, Harold Watson, Rainford J. Wilks, James G. Wilson, Steven Salzberg, Carole Ober, Esteban G. Burchard, L. Keoki Williams, Terri H. Beaty, Margaret A. Taub, Ingo Ruczinski, Rasika A. Mathias, Kathleen C. Barnes, CAAPA
Publicado no Nature Communications (2019-09-01)

Genetics of Latin American Diversity Project: Insights into population genetics and association studies in admixed groups in the Americas

Por Victor Borda, Douglas P. Loesch, Bing Guo, Roland Laboulaye, Diego Veliz-Otani, Jennifer N. French, Thiago Peixoto Leal, Stephanie M. Gogarten, Sunday Ikpe, Mateus H. Gouveia, Marla Mendes, Gonçalo R. Abecasis, Isabela Alvim, Carlos E. Arboleda-Bustos, Gonzalo Arboleda, Humberto Arboleda, Mauricio L. Barreto, Lucas Barwick, Marcos A. Bezzera, John Blangero, Vanderci Borges, Omar Caceres, Jianwen Cai, Pedro Chana-Cuevas, Zhanghua Chen, Brian Custer, Michael Dean, Carla Dinardo, Igor Domingos, Ravindranath Duggirala, Elena Dieguez, Willian Fernandez, Henrique B. Ferraz, Frank Gilliland, Heinner Guio, Bernardo Horta, Joanne E. Curran, Jill M. Johnsen, Robert C. Kaplan, Shannon Kelly, Eimear E. Kenny, Barbara A. Konkle, Charles Kooperberg, Andres Lescano, M. Fernanda Lima-Costa, Ruth J.F. Loos, Ani Manichaikul, Deborah A. Meyers, Michel S. Naslavsky, Deborah A. Nickerson, Kari E. North, Carlos Padilla, Michael Preuss, Victor Raggio, Alexander P. Reiner, Stephen S. Rich, Carlos R. Rieder, Michiel Rienstra, Jerome I. Rotter, Tatjana Rundek, Ralph L. Sacco, Cesar Sanchez, Vijay G. Sankaran, Bruno Lopes Santos-Lobato, Artur Francisco Schumacher-Schuh, Marilia O. Scliar, Edwin K. Silverman, Tamar Sofer, Jessica Lasky-Su, Vitor Tumas, Scott T. Weiss, Ignacio F. Mata, Ryan D. Hernandez, Eduardo Tarazona-Santos, Timothy D. O’Connor
Publicado no Cell Genomics (2024-11-01)