Bibliotecas PUC-SP - Busca Integrada

Not all scale-free networks are born equal: the role of the seed graph in PPI network evolution.

af Fereydoun Hormozdiari, Petra Berenbrink, Natasa Przulj, S Cenk Sahinalp
Udgivet i PLoS Computational Biology (2007-07-01)

A multi-labeled tree dissimilarity measure for comparing “clonal trees” of tumor progression

af Nikolai Karpov, Salem Malikic, Md. Khaledur Rahman, S. Cenk Sahinalp
Udgivet i Algorithms for Molecular Biology (2019-07-01)

Genotyping and Copy Number Analysis of Immunoglobin Heavy Chain Variable Genes Using Long Reads

af Michael Ford, Ehsan Haghshenas, Corey T. Watson, S. Cenk Sahinalp
Udgivet i iScience (2020-03-01)

Genotyping and Copy Number Analysis of Immunoglobulin Heavy Chain Variable Genes Using Long Reads

af Michael Ford, Ehsan Haghshenas, Corey T. Watson, S. Cenk Sahinalp
Udgivet i iScience (2020-09-01)

Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data

af Salem Malikic, Katharina Jahn, Jack Kuipers, S. Cenk Sahinalp, Niko Beerenwinkel
Udgivet i Nature Communications (2019-06-01)

Tumor Phylogeny Topology Inference via Deep Learning

af Erfan Sadeqi Azer, Mohammad Haghir Ebrahimabadi, Salem Malikić, Roni Khardon, S. Cenk Sahinalp
Udgivet i iScience (2020-11-01)

Organization and evolution of primate centromeric DNA from whole-genome shotgun sequence data.

af Can Alkan, Mario Ventura, Nicoletta Archidiacono, Mariano Rocchi, S Cenk Sahinalp, Evan E Eichler
Udgivet i PLoS Computational Biology (2007-09-01)

smyRNA: a novel Ab initio ncRNA gene finder.

af Raheleh Salari, Cagri Aksay, Emre Karakoc, Peter J Unrau, Iman Hajirasouliha, S Cenk Sahinalp
Udgivet i PLoS ONE (2009-01-01)

Optimal compressed representation of high throughput sequence data via light assembly

af Antonio A. Ginart, Joseph Hui, Kaiyuan Zhu, Ibrahim Numanagić, Thomas A. Courtade, S. Cenk Sahinalp, David N. Tse
Udgivet i Nature Communications (2018-02-01)

Learning-augmented sketching offers improved performance for privacy preserving and secure GWAS

af Junyan Xu, Kaiyuan Zhu, Jieling Cai, Can Kockan, Natnatee Dokmai, Hyunghoon Cho, David P. Woodruff, S. Cenk Sahinalp
Udgivet i iScience (2025-03-01)

Publisher Correction: Optimal compressed representation of high throughput sequence data via light assembly

af Antonio A. Ginart, Joseph Hui, Kaiyuan Zhu, Ibrahim Numanagić, Thomas A. Courtade, S. Cenk Sahinalp, David N. Tse
Udgivet i Nature Communications (2018-04-01)

Strain level microbial detection and quantification with applications to single cell metagenomics

af Kaiyuan Zhu, Alejandro A. Schäffer, Welles Robinson, Junyan Xu, Eytan Ruppin, A. Funda Ergun, Yuzhen Ye, S. Cenk Sahinalp
Udgivet i Nature Communications (2022-10-01)

Geny: a genotyping tool for allelic decomposition of killer cell immunoglobulin-like receptor genes

af Qinghui Zhou, Mazyar Ghezelji, Ananth Hari, Ananth Hari, Michael K. B. Ford, Connor Holley, S. Cenk Sahinalp, Ibrahim Numanagić
Udgivet i Frontiers in Immunology (2024-12-01)

Robustness of Massively Parallel Sequencing Platforms.

af Pınar Kavak, Bayram Yüksel, Soner Aksu, M Oguzhan Kulekci, Tunga Güngör, Faraz Hach, S Cenk Şahinalp, Turkish Human Genome Project, Can Alkan, Mahmut Şamil Sağıroğlu
Udgivet i PLoS ONE (2015-01-01)

Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes

af Ibrahim Numanagić, Salem Malikić, Michael Ford, Xiang Qin, Lorraine Toji, Milan Radovich, Todd C. Skaar, Victoria M. Pratt, Bonnie Berger, Steve Scherer, S. Cenk Sahinalp
Udgivet i Nature Communications (2018-02-01)

Correction to: ReMixT: clone-specific genomic structure estimation in cancer

af Andrew W. McPherson, Andrew Roth, Gavin Ha, Cedric Chauve, Adi Steif, Camila P. E. de Souza, Peter Eirew, Alexandre Bouchard-Côté, Sam Aparicio, S. Cenk Sahinalp, Sohrab P. Shah
Udgivet i Genome Biology (2017-10-01)

ReMixT: clone-specific genomic structure estimation in cancer

af Andrew W. McPherson, Andrew Roth, Gavin Ha, Cedric Chauve, Adi Steif, Camila P. E. de Souza, Peter Eirew, Alexandre Bouchard-Côté, Sam Aparicio, S. Cenk Sahinalp, Sohrab P. Shah
Udgivet i Genome Biology (2017-07-01)

deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.

af Andrew McPherson, Fereydoun Hormozdiari, Abdalnasser Zayed, Ryan Giuliany, Gavin Ha, Mark G F Sun, Malachi Griffith, Alireza Heravi Moussavi, Janine Senz, Nataliya Melnyk, Marina Pacheco, Marco A Marra, Martin Hirst, Torsten O Nielsen, S Cenk Sahinalp, David Huntsman, Sohrab P Shah
Udgivet i PLoS Computational Biology (2011-05-01)

Computational pharmacogenotype extraction from clinical next-generation sequencing

af Tyler Shugg, Reynold C. Ly, Wilberforce Osei, Elizabeth J. Rowe, Caitlin A. Granfield, Ty C. Lynnes, Elizabeth B. Medeiros, Jennelle C. Hodge, Amy M. Breman, Bryan P. Schneider, S. Cenk Sahinalp, Ibrahim Numanagić, Benjamin A. Salisbury, Steven M. Bray, Ryan Ratcliff, Todd C. Skaar
Udgivet i Frontiers in Oncology (2023-07-01)

Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes

af Matthew A. Reyna, David Haan, Marta Paczkowska, Lieven P. C. Verbeke, Miguel Vazquez, Abdullah Kahraman, Sergio Pulido-Tamayo, Jonathan Barenboim, Lina Wadi, Priyanka Dhingra, Raunak Shrestha, Gad Getz, Michael S. Lawrence, Jakob Skou Pedersen, Mark A. Rubin, David A. Wheeler, Søren Brunak, Jose M. G. Izarzugaza, Ekta Khurana, Kathleen Marchal, Christian von Mering, S. Cenk Sahinalp, Alfonso Valencia, PCAWG Drivers and Functional Interpretation Working Group, Jüri Reimand, Joshua M. Stuart, Benjamin J. Raphael, PCAWG Consortium
Udgivet i Nature Communications (2022-12-01)