Bibliotecas PUC-SP - Busca Integrada

Detection of an amplification bias associated to Leuconostocaceae family with a universal primer routinely used for monitoring microbial community structures within food products

Por Simon Poirier, Olivier Rué, Gwendoline Coeuret, Marie-Christine Champomier-Vergès, Valentin Loux, Stéphane Chaillou
Publicado no BMC Research Notes (2018-11-01)

Metagenomics reveals contrasted responses of microbial communities to wheat straw amendment in cropland and grassland soils

Por Domitille Jarrige, Vincent Tardy, Valentin Loux, Olivier Rué, Abad Chabbi, Sébastien Terrat, Pierre-Alain Maron
Publicado no Scientific Reports (2025-04-01)

The bacterial interlocked process ONtology (BiPON): a systemic multi-scale unified representation of biological processes in prokaryotes

Por Vincent J. Henry, Anne Goelzer, Arnaud Ferré, Stephan Fischer, Marc Dinh, Valentin Loux, Christine Froidevaux, Vincent Fromion
Publicado no Journal of Biomedical Semantics (2017-11-01)

Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing...

Por Simon Poirier, Olivier Rué, Raphaëlle Peguilhan, Gwendoline Coeuret, Monique Zagorec, Marie-Christine Champomier-Vergès, Valentin Loux, Stéphane Chaillou
Publicado no PLoS ONE (2018-01-01)

Omnicrobe, an open-access database of microbial habitats and phenotypes using a comprehensive text mining and data fusion approach.

Por Sandra Dérozier, Robert Bossy, Louise Deléger, Mouhamadou Ba, Estelle Chaix, Olivier Harlé, Valentin Loux, Hélène Falentin, Claire Nédellec
Publicado no PLoS ONE (2023-01-01)

Abundance, Diversity and Role of ICEs and IMEs in the Adaptation of <i>Streptococcus salivarius</i> to the Environment

Por Julie Lao, Gérard Guédon, Thomas Lacroix, Florence Charron-Bourgoin, Virginie Libante, Valentin Loux, Hélène Chiapello, Sophie Payot, Nathalie Leblond-Bourget
Publicado no Genes (2020-08-01)

MilkOligoCorpus: A semantically annotated resource for knowledge extraction on mammalian milk oligosaccharides.

Por Mathilde Rumeau, Marine Courtin, Robert Bossy, Clara Sauvion, Valentin Loux, Mouhamadou Ba, Christelle Knudsen, Sylvie Combes, Claire Nédellec, Louise Deléger
Publicado no PLoS ONE (2025-01-01)

MilkOligoCorpus: A semantically annotated resource for knowledge extraction on mammalian milk oligosaccharides

Por Mathilde Rumeau, Marine Courtin, Robert Bossy, Clara Sauvion, Valentin Loux, Mouhamadou Ba, Christelle Knudsen, Sylvie Combes, Claire Nédellec, Louise Deléger
Publicado no PLoS ONE (2025-01-01)

MilkOligoThesaurus, a dataset of mammalian milk oligosaccharide synonyms

Por Mathilde Rumeau, François Fenaille, Agnès Girard, Valentin Loux, Mouhamadou Ba, Claire Nédellec, Louise Deléger, Robert Bossy, Sophie Aubin, Christelle Knudsen, Sylvie Combes
Publicado no Data in Brief (2024-06-01)

Integration of Multiomic Data to Characterize the Influence of Milk Fat Composition on <i>Cantal</i>-Type Cheese Microbiota

Por Marie Frétin, Amaury Gérard, Anne Ferlay, Bruno Martin, Solange Buchin, Sébastien Theil, Etienne Rifa, Valentin Loux, Olivier Rué, Christophe Chassard, Céline Delbès
Publicado no Microorganisms (2022-02-01)

The arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese.

Por Christophe Monnet, Valentin Loux, Jean-François Gibrat, Eric Spinnler, Valérie Barbe, Benoit Vacherie, Frederick Gavory, Edith Gourbeyre, Patricia Siguier, Michaël Chandler, Rayda Elleuch, Françoise Irlinger, Tatiana Vallaeys
Publicado no PLoS ONE (2010-11-01)

Data from an integrative approach decipher the surface proteome of Propionibacterium freudenreichii

Por Caroline Le Maréchal, Vincent Peton, Coline Plé, Christophe Vroland, Julien Jardin, Valérie Briard-Bion, Gaël Durant, Victoria Chuat, Valentin Loux, Benoit Foligné, Stéphanie-Marie Deutsch, Hélène Falentin, Gwénaël Jan
Publicado no Data in Brief (2014-12-01)

Holistic integration of omics data reveals the drivers that shape the ecology of microbial meat spoilage scenarios

Por Simon Poirier, Gwendoline Coeuret, Marie-Christine Champomier-Vergès, Marie-Hélène Desmonts, Dalal Werner, Carole Feurer, Bastien Frémaux, Sandrine Guillou, Ngoc-Du Martin Luong, Olivier Rué, Valentin Loux, Monique Zagorec, Stéphane Chaillou, on behalf of the ANR Redlosses Consortium Group
Publicado no Frontiers in Microbiology (2023-10-01)

The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications.

Por Hélène Falentin, Stéphanie-Marie Deutsch, Gwenaël Jan, Valentin Loux, Anne Thierry, Sandrine Parayre, Marie-Bernadette Maillard, Julien Dherbécourt, Fabien J Cousin, Julien Jardin, Patricia Siguier, Arnaud Couloux, Valérie Barbe, Benoit Vacherie, Patrick Wincker, Jean-François Gibrat, Claude Gaillardin, Sylvie Lortal
Publicado no PLoS ONE (2010-07-01)

Overview of a surface-ripened cheese community functioning by meta-omics analyses.

Por Eric Dugat-Bony, Cécile Straub, Aurélie Teissandier, Djamila Onésime, Valentin Loux, Christophe Monnet, Françoise Irlinger, Sophie Landaud, Marie-Noëlle Leclercq-Perlat, Pascal Bento, Sébastien Fraud, Jean-François Gibrat, Julie Aubert, Frédéric Fer, Eric Guédon, Nicolas Pons, Sean Kennedy, Jean-Marie Beckerich, Dominique Swennen, Pascal Bonnarme
Publicado no PLoS ONE (2015-01-01)

Genomic Diversity and Evolution of the Fish Pathogen Flavobacterium psychrophilum

Por Eric Duchaud, Tatiana Rochat, Christophe Habib, Christophe Habib, Paul Barbier, Valentin Loux, Cyprien Guérin, Inger Dalsgaard, Lone Madsen, Hanne Nilsen, Krister Sundell, Tom Wiklund, Nicole Strepparava, Thomas Wahli, Greta Caburlotto, Amedeo Manfrin, Gregory D. Wiens, Erina Fujiwara-Nagata, Ruben Avendaño-Herrera, Jean-François Bernardet, Pierre Nicolas
Publicado no Frontiers in Microbiology (2018-02-01)

Comparative Genome Analysis of Enterococcus cecorum Reveals Intercontinental Spread of a Lineage of Clinical Poultry Isolates

Por Jeanne Laurentie, Valentin Loux, Christelle Hennequet-Antier, Emilie Chambellon, Julien Deschamps, Angélina Trotereau, Sylviane Furlan, Claire Darrigo, Florent Kempf, Julie Lao, Marine Milhes, Céline Roques, Benoit Quinquis, Céline Vandecasteele, Roxane Boyer, Olivier Bouchez, Francis Repoila, Jean Le Guennec, Hélène Chiapello, Romain Briandet, Emmanuelle Helloin, Catherine Schouler, Isabelle Kempf, Pascale Serror
Publicado no mSphere (2023-04-01)

Large-scale multivariate dataset on the characterization of microbiota diversity, microbial growth dynamics, metabolic spoilage volatilome and sensorial profiles of two industriall...

Por Simon Poirier, Ngoc-Du Martin Luong, Valérie Anthoine, Sandrine Guillou, Jeanne-Marie Membré, Nicolas Moriceau, Sandrine Rezé, Monique Zagorec, Carole Feurer, Bastien Frémaux, Sabine Jeuge, Emeline Robieu, Marie Champomier-Vergès, Gwendoline Coeuret, Emilie Cauchie, Georges Daube, Nicolas Korsak, Louis Coroller, Noémie Desriac, Marie-Hélène Desmonts, Rodérick Gohier, Dalal Werner, Valentin Loux, Olivier Rué, Marie-Hélène Dohollou, Tatiana Defosse, Stéphane Chaillou
Publicado no Data in Brief (2020-06-01)