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RAGA: RNA sequence alignment by genetic algorithm.

We describe a new approach for accurately aligning two homologous RNA sequences when the secondary structure of one of them is known. To do so we developed two software packages, called RAGA and PRAGA, which use a genetic algorithm approach to optimize the alignments. RAGA is mainly an extension of...

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Detalhes bibliográficos
Main Authors:	Notredame, C, O'Brien, E A, Higgins, D G, Mason, J A, Mellor, J, Defossez, P A, Baert, J L, Monnot, M, de Launoit, Y, Scott, R S, Truong, K Y, Vos, J M, Dalgaard, J Z, Klar, A J, Moser, M J, Holley, W R, Chatterjee, A, Mian, I S, Ono, T, Scalf, M, Smith, L M, Jost, J P, Frémont, M, Siegmann, M, Hofsteenge, J, Fouts, D E, True, H L, Celander, D W, Freier, S M, Altmann, K H, Pradhan, S, Talbot, D, Sha, M, Benner, J, Hornstra, L, Li, E, Jaenisch, R, Roberts, R J, Gao, L, Frey, M R, Matera, A G, Horn, T, Chang, C A, Urdea, M S, Lauber, E, Guilley, H, Richards, K, Jonard, G, Gilmer, D, Myers, M P, Rothenfluh, A, Chang, M, Young, M W, Schmidt, J G, Christensen, L, Nielsen, P E, Orgel, L E, Justice, M C, Hogan, B P, Vershon, A K, Lamm, G M, Steinlein, P, Cotten, M, Christofori, G, Yoshinaga, K, Kakehi, T, Shima, Y, Iinuma, H, Masuzawa, T, Ueno, M, Hammann, C, Hormes, R, Sczakiel, G, Tabler, M, Huang, X, Yu, P, LeProust, E, Gao, X, Debbie, P, Young, K, Pooler, L, Lamp, C, Marietta, P, Wagner, R, Feldstein, P A, Levy, L, Randles, J W, Owens, R A, Klucher, K M, Gerlach, M J, Daley, G Q, Coleman, R S, Pires, R M, Zerby, D B, Patton, J R, Ouali, M, Gousset, H, Geinguenaud, F, Liquier, J, Gabarro-Arpa, J, Le Bret, M, Taillandier, E, Ursic, D, Himmel, K L, Gurley, K A, Webb, F, Culbertson, M R, Thieringer, H A, Singh, K, Trivedi, H, Inouye, M, Ozoline, O N, Deev, A A, Arkhipova, M V, Frutos, A G, Liu, Q, Thiel, A J, Sanner, A M, Condon, A E, Corn, R M, Menichini, P, Viaggi, S, Gallerani, E, Fronza, G, Ottaggio, L, Comes, A, Ellwart, J W, Abbondandolo, A, Shindo, H, Matsumoto, N, Shimizu, M, Head, S R, Rogers, Y H, Parikh, K, Lan, G, Anderson, S, Goelet, P, Boyce-Jacino, M T, Matveeva, O, Felden, B, Audlin, S, Gesteland, R F, Atkins, J F, Körner, K, Wolfraim, L A, Lucibello, F C, Müller, R, Loor, G, Zhang, S J, Zhang, P, Toomey, N L, Lee, M Y, Dioh, W, Tharreau, D, Lebrun, M H, Kimura, S, Kai, M, Kobayashi, H, Suzuki, A, Morioka, H, Otsuka, E, Sakaguchi, K, Müller, M, Kruse, L, Tabrett, A M, Barbara, D J, He, M, Taussig, M J, Kumar, P, Gupta, K C, Cassidy, S A, Slickers, P, Trent, J O, Capaldi, D C, Roselt, P D, Reese, C B, Neidle, S, Fox, K R, Schwarz, S, Hess, D, Pal, D, Chattopadhyay, S, Chandra, S, Sarkar, D, Chakraborty, A, Das Gupta, C, Mikheeva, S, Hakim-Zargar, M, Carlson, D, Jarrell, K, Ben-Shlomo, H, Levitan, A, Béjà, O, Michaeli, S, Greenberg, M E, Mathews, M B, Liu, N, Zwicker, J
Formato:	Artigo
Idioma:	English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English
Publicado em:	1997
Assuntos:	Research Article
Acesso em linha:	https://ncbi.nlm.nih.gov/pmc/articles/PMC147093/ https://ncbi.nlm.nih.gov/pubmed/9358168 https://ncbi.nlm.nih.gov/pmc/articles/PMC147094/ https://ncbi.nlm.nih.gov/pubmed/9358188 https://ncbi.nlm.nih.gov/pmc/articles/PMC147095/ https://ncbi.nlm.nih.gov/pubmed/9358152 https://ncbi.nlm.nih.gov/pmc/articles/PMC147096/ https://ncbi.nlm.nih.gov/pubmed/9358159 https://ncbi.nlm.nih.gov/pmc/articles/PMC147097/ https://ncbi.nlm.nih.gov/pubmed/9358175 https://ncbi.nlm.nih.gov/pmc/articles/PMC147098/ https://ncbi.nlm.nih.gov/pubmed/9358169 https://ncbi.nlm.nih.gov/pmc/articles/PMC147099/ https://ncbi.nlm.nih.gov/pubmed/9358164 https://ncbi.nlm.nih.gov/pmc/articles/PMC147100/ https://ncbi.nlm.nih.gov/pubmed/9358153 https://ncbi.nlm.nih.gov/pmc/articles/PMC147101/ https://ncbi.nlm.nih.gov/pubmed/9358149 https://ncbi.nlm.nih.gov/pmc/articles/PMC147102/ https://ncbi.nlm.nih.gov/pubmed/9358180 https://ncbi.nlm.nih.gov/pmc/articles/PMC147103/ https://ncbi.nlm.nih.gov/pubmed/9365252 https://ncbi.nlm.nih.gov/pmc/articles/PMC147104/ https://ncbi.nlm.nih.gov/pubmed/9365265 https://ncbi.nlm.nih.gov/pmc/articles/PMC147105/ https://ncbi.nlm.nih.gov/pubmed/9365250 https://ncbi.nlm.nih.gov/pmc/articles/PMC147106/ https://ncbi.nlm.nih.gov/pubmed/9365248 https://ncbi.nlm.nih.gov/pmc/articles/PMC147107/ https://ncbi.nlm.nih.gov/pubmed/9365258 https://ncbi.nlm.nih.gov/pmc/articles/PMC147108/ https://ncbi.nlm.nih.gov/pubmed/9365251 https://ncbi.nlm.nih.gov/pmc/articles/PMC147109/ https://ncbi.nlm.nih.gov/pubmed/9365266 https://ncbi.nlm.nih.gov/pmc/articles/PMC147110/ https://ncbi.nlm.nih.gov/pubmed/9365268 https://ncbi.nlm.nih.gov/pmc/articles/PMC147111/ https://ncbi.nlm.nih.gov/pubmed/9365264 https://ncbi.nlm.nih.gov/pmc/articles/PMC147112/ https://ncbi.nlm.nih.gov/pubmed/9365249 https://ncbi.nlm.nih.gov/pmc/articles/PMC147113/ https://ncbi.nlm.nih.gov/pubmed/9365253 https://ncbi.nlm.nih.gov/pmc/articles/PMC147114/ https://ncbi.nlm.nih.gov/pubmed/9365263 https://ncbi.nlm.nih.gov/pmc/articles/PMC147115/ https://ncbi.nlm.nih.gov/pubmed/9365267 https://ncbi.nlm.nih.gov/pmc/articles/PMC147116/ https://ncbi.nlm.nih.gov/pubmed/9365269 https://ncbi.nlm.nih.gov/pmc/articles/PMC147117/ https://ncbi.nlm.nih.gov/pubmed/9365255 https://ncbi.nlm.nih.gov/pmc/articles/PMC147118/ https://ncbi.nlm.nih.gov/pubmed/9365261 https://ncbi.nlm.nih.gov/pmc/articles/PMC147119/ https://ncbi.nlm.nih.gov/pubmed/9365262 https://ncbi.nlm.nih.gov/pmc/articles/PMC147120/ https://ncbi.nlm.nih.gov/pubmed/9365256 https://ncbi.nlm.nih.gov/pmc/articles/PMC147121/ https://ncbi.nlm.nih.gov/pubmed/9365254 https://ncbi.nlm.nih.gov/pmc/articles/PMC147122/ https://ncbi.nlm.nih.gov/pubmed/9365259 https://ncbi.nlm.nih.gov/pmc/articles/PMC147123/ https://ncbi.nlm.nih.gov/pubmed/9365247 https://ncbi.nlm.nih.gov/pmc/articles/PMC147124/ https://ncbi.nlm.nih.gov/pubmed/9441280 https://ncbi.nlm.nih.gov/pmc/articles/PMC147125/ https://ncbi.nlm.nih.gov/pubmed/9365260 https://ncbi.nlm.nih.gov/pmc/articles/PMC147126/ https://ncbi.nlm.nih.gov/pubmed/9365257 https://ncbi.nlm.nih.gov/pmc/articles/PMC147127/ https://ncbi.nlm.nih.gov/pubmed/9396817 https://ncbi.nlm.nih.gov/pmc/articles/PMC147128/ https://ncbi.nlm.nih.gov/pubmed/9396809 https://ncbi.nlm.nih.gov/pmc/articles/PMC147129/ https://ncbi.nlm.nih.gov/pubmed/9396799 https://ncbi.nlm.nih.gov/pmc/articles/PMC147130/ https://ncbi.nlm.nih.gov/pubmed/9396813 https://ncbi.nlm.nih.gov/pmc/articles/PMC147131/ https://ncbi.nlm.nih.gov/pubmed/9396827 https://ncbi.nlm.nih.gov/pmc/articles/PMC147132/ https://ncbi.nlm.nih.gov/pubmed/9396804 https://ncbi.nlm.nih.gov/pmc/articles/PMC147133/ https://ncbi.nlm.nih.gov/pubmed/9396825 https://ncbi.nlm.nih.gov/pmc/articles/PMC147134/ https://ncbi.nlm.nih.gov/pubmed/9396828 https://ncbi.nlm.nih.gov/pmc/articles/PMC147135/ https://ncbi.nlm.nih.gov/pubmed/9396826 https://ncbi.nlm.nih.gov/pmc/articles/PMC147136/ https://ncbi.nlm.nih.gov/pubmed/9396793 https://ncbi.nlm.nih.gov/pmc/articles/PMC147137/ https://ncbi.nlm.nih.gov/pubmed/9396815 https://ncbi.nlm.nih.gov/pmc/articles/PMC147138/ https://ncbi.nlm.nih.gov/pubmed/9396814 https://ncbi.nlm.nih.gov/pmc/articles/PMC147139/ https://ncbi.nlm.nih.gov/pubmed/9396820 https://ncbi.nlm.nih.gov/pmc/articles/PMC147140/ https://ncbi.nlm.nih.gov/pubmed/9396805 https://ncbi.nlm.nih.gov/pmc/articles/PMC147141/ https://ncbi.nlm.nih.gov/pubmed/9396810 https://ncbi.nlm.nih.gov/pmc/articles/PMC147142/ https://ncbi.nlm.nih.gov/pubmed/9396796
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RAGA: RNA sequence alignment by genetic algorithm.

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