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SpliceDB: database of canonical and non-canonical mammalian splice sites

A database (SpliceDB) of known mammalian splice site sequences has been developed. We extracted 43 337 splice pairs from mammalian divisions of the gene-centered Infogene database, including sites from incomplete or alternatively spliced genes. Known EST sequences supported 22 815 of them. After dis...

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Detalhes bibliográficos
Main Authors:	Burset, M., Seledtsov, I. A., Solovyev, V. V., Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Birney, E., Biswas, M., Bucher, P., Cerutti, L., Corpet, F., Croning, M. D. R., Durbin, R., Falquet, L., Fleischmann, W., Gouzy, J., Hermjakob, H., Hulo, N., Jonassen, I., Kahn, D., Kanapin, A., Karavidopoulou, Y., Lopez, R., Marx, B., Mulder, N. J., Oinn, T. M., Pagni, M., Servant, F., Sigrist, C. J. A., Zdobnov, E. M., Grunau, Christoph, Renault, Eric, Rosenthal, André, Roizes, Gérard, Gonzalez-Couto, Eduardo, Hayes, Brian, Danckaert, Anne, Haft, Daniel H., Loftus, Brendan J., Richardson, Delwood L., Yang, Fan, Eisen, Jonathan A., Paulsen, Ian T., White, Owen, Chiu, Wing Lok Abe Kurtz, Sze, Chun Ngai, Ip, Lai Nang, Chan, Sze Ki, Au-Yeung, Steve Chik Fun, Ponomarenko, Julia V., Merkulova, Tatyana I., Vasiliev, Gennady V., Levashova, Zoya B., Orlova, Galina V., Lavryushev, Sergey V., Fokin, Oleg N., Ponomarenko, Mikhail P., Frolov, Anatoly S., Sarai, Akinori, Peterson, Jeremy D., Umayam, Lowell A., Dickinson, Tanja, Hickey, Erin K., Watanabe, Kanako, Nelson, James, Harayama, Shigeaki, Kasai, Hiroaki, Baranov, Pavel V., Gurvich, Olga L., Fayet, Olivier, Prère, Marie Françoise, Miller, W. Allen, Gesteland, Raymond F., Atkins, John F., Giddings, Michael C., Banerjee-Basu, Sharmila, Sink, Daniel W., Baxevanis, Andreas D., Pagni, Marco, Iseli, Christian, Junier, Thomas, Falquet, Laurent, Jongeneel, Victor, Bucher, Philipp, Roberts, Richard J., Macelis, Dana, Gribskov, Michael, Fana, Fariba, Harper, Jeffrey, Hope, Debra A., Harmon, Alice C., Smith, Douglas W., Tax, Frans E., Zhang, Guangfa, Gräf, Stefan, Strothmann, Dirk, Kurtz, Stefan, Steger, Gerhard, Minoshima, Shinsei, Mitsuyama, Susumu, Ohtsubo, Masafumi, Kawamura, Takashi, Ito, Sachiko, Shibamoto, Sayumi, Ito, Fumiaki, Shimizu, Nobuyoshi, Price, Carl A., Reardon, Ellen M., Ishii, Takahiro, Yoshida, Ken-ichi, Terai, Goro, Fujita, Yasutaro, Nakai, Kenta, Bernal, Axel, Ear, Uy, Kyrpides, Nikos, Robertson, M Clare, Devlin, Nancy, Gardner, Melinda M, Campbell, A John, McGee, Rob, Pierfitte, Corinne, Macouillard, Gerard, Thicoïpe, Michel, Chaslerie, Anicet, Pehourcq, Fabienne, Aïssou, Myriam, Martinez, Béatrice, Lagnaoui, Rajaa, Fourrier, Annie, Bégaud, Bernard, Dangoumau, Jacques, Moore, Nicholas, Hicks, Lisa K, Lin, Yulia, Robertson, David W, Robinson, Deborah L, Woodrow, Sarah I, Myles, Paul S, McLeod, Andrew D M, Hunt, Jennifer O, Fletcher, Helen, McKinley, Robert K, Fraser, Robin C, Baker, Richard, Lobitz, Brad, Wood, Byron L., Averner, Maurice M., McKay, Christopher P., Ehrenfreund, Pascale, Glavin, Daniel P., Botta, Oliver, Cooper, George, Bada, Jeffrey L., Freund, Friedemann, Staple, Aaron, Scoville, John, Blake, Ruth E., Alt, Jeffrey C., Martini, Anna M., Gerstell, M. F., Francisco, J. S., Yung, Y. L., Boxe, C., Aaltonee, E. T., Summit, Melanie, Baross, John A., Thomas-Keprta, Kathie L., Clemett, Simon J., Bazylinski, Dennis A., Kirschvink, Joseph L., McKay, David S., Wentworth, Susan J., Vali, Hojatollah, Gibson, Everett K., McKay, Mary Fae, Romanek, Christopher S., Dismukes, G. C., Klimov, V. V., Baranov, S. V., Kozlov, Yu. N., DasGupta, J., Tyryshkin, A., Friedmann, E. Imre, Wierzchos, Jacek, Ascaso, Carmen, Winklhofer, Michael, Levy, Yaakov, Jortner, Joshua, Becker, Oren M., Bartberger, Michael D., Fukuto, Jon M., Houk, K. N., Miki, Rika, Kadota, Koji, Bono, Hidemasa, Mizuno, Yosuke, Tomaru, Yasuhiro, Carninci, Piero, Itoh, Masayoshi, Shibata, Kazuhiro, Kawai, Jun, Konno, Hideaki, Watanabe, Sachihiko, Sato, Kenjiro, Tokusumi, Yumiko, Kikuchi, Noriko, Ishii, Yoshiyuki, Hamaguchi, Yohei, Nishizuka, Itaru, Goto, Hitoshi, Nitanda, Hiroyuki, Satomi, Susumu, Yoshiki, Atsushi, Kusakabe, Moriaki, DeRisi, Joseph L., Eisen, Michael B., Iyer, Vishwnath R., Brown, Patrick O., Muramatsu, Masami, Shimada, Hiroshi, Okazaki, Yasushi, Hayashizaki, Yoshihide, Sly, William S., Vogler, Carole, Grubb, Jeffrey H., Zhou, Mi, Jiang, Jinxing, Zhou, Xiao Yan, Tomatsu, Shunji, Bi, Yanhua, Snella, Elizabeth M., Johnson-Pais, Teresa, Degnin, Catherine, Thayer, Mathew J., Padilla, Jennifer E., Colovos, Christos, Yeates, Todd O., Yim, Mijung, Ono, Takashi, Irimura, Tatsuro, Kanazawa, Takashi, Watanabe, Masahiko, Matsushima-Hibiya, Yuko, Kono, Takuo, Tanaka, Noriaki, Koyama, Kotaro, Sugimura, Takashi, Wakabayashi, Keiji, Cutruzzolà, Francesca, Brown, Kieron, Wilson, Emma K., Bellelli, Andrea, Arese, Marzia, Tegoni, Mariella, Cambillau, Christian, Brunori, Maurizio, Little, Edward B., Crossin, Kathryn L., Krushel, Leslie A., Edelman, Gerald M., Cunningham, Bruce A., Shibata, Norihito, Arita, Makoto, Misaki, Yuko, Dohmae, Naoshi, Takio, Koji, Ono, Teruo, Inoue, Keizo, Arai, Hiroyuki, Zhou, Fang Xiao, Merianos, Helen J., Brunger, Axel T., Engelman, Donald M., Maekawa, Akiko, Kanaoka, Yoshihide, Lam, Bing K., Austen, K. Frank, Lukowitz, Wolfgang, Nickle, Todd C., Meinke, David W., Last, Robert L., Conklin, Patricia L., Somerville, Christopher R.
Formato:	Artigo
Idioma:	English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English English
Publicado em:	Oxford University Press 2001
Assuntos:	Article Papers Primary Care Physical Sciences Biological Sciences
Acesso em linha:	https://ncbi.nlm.nih.gov/pmc/articles/PMC29840/ https://ncbi.nlm.nih.gov/pubmed/11125105 https://ncbi.nlm.nih.gov/pmc/articles/PMC29841/ https://ncbi.nlm.nih.gov/pubmed/11125043 https://ncbi.nlm.nih.gov/pmc/articles/PMC29842/ https://ncbi.nlm.nih.gov/pubmed/11125109 https://ncbi.nlm.nih.gov/pmc/articles/PMC29843/ https://ncbi.nlm.nih.gov/pubmed/11125130 https://ncbi.nlm.nih.gov/pmc/articles/PMC29844/ https://ncbi.nlm.nih.gov/pubmed/11125044 https://ncbi.nlm.nih.gov/pmc/articles/PMC29845/ https://ncbi.nlm.nih.gov/pubmed/11125100 https://ncbi.nlm.nih.gov/pmc/articles/PMC29846/ https://ncbi.nlm.nih.gov/pubmed/11125051 https://ncbi.nlm.nih.gov/pmc/articles/PMC29847/ https://ncbi.nlm.nih.gov/pubmed/11125123 https://ncbi.nlm.nih.gov/pmc/articles/PMC29848/ https://ncbi.nlm.nih.gov/pubmed/11125067 https://ncbi.nlm.nih.gov/pmc/articles/PMC29849/ https://ncbi.nlm.nih.gov/pubmed/11125132 https://ncbi.nlm.nih.gov/pmc/articles/PMC29850/ https://ncbi.nlm.nih.gov/pubmed/11125107 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SpliceDB: database of canonical and non-canonical mammalian splice sites

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